Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01348 ACCCCTTCCCGCTACAGTACGCGCGTCCATTATTTATCTACGGTGCCGCCTCATCCCCCTTCCAAAAAAAAGAAATCCCCCCCTCCCCTTCCATTTTCATTTCTTTTCTTCTCTTTCGAAGAACAACAACACCACAGCTTTTATGGGATGGAACCCAACTCCTCTAACAAAGACATTGTAGCTCCTTTTGTTCTCAAAACTTATCAAATGGTCAATGATCCCCTCACCGACTCTTTCATCTCTTGGGGCTCTGCTAATAACAGCTTCATCGTTCTCGACCCTCTCCATTTCTCACATACTCTCTTACCCGCTTTTTTCAAACATAATAATTTCTCCAGCTTCGTTCGTCAACTCAATACTTACGGGTTCCGGAAGGTAGATCCAGATAGATGGGAATTTGCGAACGAATGGTTTCTACGAGGTCAATTTCAGTTACTGAAAAACATTGTGAGGAGAAAACAGAGTTGTAATAAGTATTTGATTGGGGATCAGATGGGGGATGAGGAATTAGTCACTGAAATTGCTAGATTGAGGAAAGAACAGAGGGCTCTGGAAGAACAACTTGAAGGGATGAAGAAACGTCTTGAAACAACTGAGAAACGACCACAACAGATGATGGCTTTTCTTCATAAAGTGGTGGAAGACCCTGAAATTCTTCCACGGATCATGCTTCATAAAGATCCAACTCGGCTTCAACTTTCAGAGAAGAAACGGCGGTTGATGATTTCCTCTTCTTCCTCTTCCCCTTCCACCACTACCCTCACCGAAGGAGATGAAATCGAAGAGGACAGTAATAATCCGCAGGATTTTGGGCCTAATTTCTCGTCGCCGGAGGTTTCTGGGCCTTGGTTTTTACGGGAGGCGGAGGGTAATTTGGGGATTCCAATTCCTCCGGTGCCGGCGATTGATTTAGGGATAAGTAGTAACGGCGGAGAGAGAAAGTATTTGACGGAAATGACAGTGGAGGAAACTCATCCACCACCACCGCCTTATCCATTTTCTCTTTTCGGGTGTGGCTTTTAG 1023 44.87 TPSRYSTRVHYLSTVPPHPPSKKKKSPPPLPFSFLFFSFEEQQHHSFYGMEPNSSNKDIVAPFVLKTYQMVNDPLTDSFISWGSANNSFIVLDPLHFSHTLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQFQLLKNIVRRKQSCNKYLIGDQMGDEELVTEIARLRKEQRALEEQLEGMKKRLETTEKRPQQMMAFLHKVVEDPEILPRIMLHKDPTRLQLSEKKRRLMISSSSSSPSTTTLTEGDEIEEDSNNPQDFGPNFSSPEVSGPWFLREAEGNLGIPIPPVPAIDLGISSNGGERKYLTEMTVEETHPPPPPYPFSLFGCGF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19509543 19510874 + MELO3C025338.2.1 Cme02g01348 321237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01348 340 MobiDBLite consensus disorder prediction 236 281 - -
Cme02g01348 340 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 61 333 - -
Cme02g01348 340 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme02g01348 340 PRINTS Heat shock factor (HSF) domain signature 114 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme02g01348 340 PRINTS Heat shock factor (HSF) domain signature 63 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme02g01348 340 Pfam HSF-type DNA-binding 63 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme02g01348 340 MobiDBLite consensus disorder prediction 1 27 - -
Cme02g01348 340 Gene3D - 55 153 IPR036388 -
Cme02g01348 340 SUPERFAMILY Winged helix DNA-binding domain 60 152 IPR036390 -
Cme02g01348 340 SMART hsfneu3 59 152 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cme02g01348 340 Coils Coil 167 201 - -
Cme02g01348 340 MobiDBLite consensus disorder prediction 238 255 - -
Cme02g01348 340 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 61 333 IPR027725 -
Cme02g01348 340 ProSitePatterns HSF-type DNA-binding domain signature. 102 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01348 K09419 HSFF; heat shock transcription factor, other eukaryote - csv:101211206 538.11
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01348 Cme05g01974 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01348 Cme-Chr2:19509543 Cme06g02455 Cme-Chr6:31576186 2.62E-54 dispersed
Cme02g01348 Cme-Chr2:19509543 Cme05g01974 Cme-Chr5:28290590 8.50E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g344 Blo01g00509 . Bda01g02063 . . . . . Cmo10g00652 Cmo11g00611 Cma05g01337 . Car05g01251 . Sed08g0764 Cpe04g01133 Cpe18g00437 Bhi02g01124 Tan09g1294 Cmetu02g1321 . Hepe09g0754 . . Cla11g00224 . Cec11g0257 Cco11g0267 Clacu11g0387 Cmu11g0236 Cre11g0734 . . Cone4ag0727 . Lsi06g00879 Csa02g00128 Chy05g01367 Cme02g01348 Blo08g00287 . . . Bpe08g00470 . Bma01g00185 . Sed10g1395 Cmo05g01345 . Cma10g00613 Cma11g00606 Car10g00567 Car11g00485 Cpe11g01109 . Bhi06g02028 Tan08g0173 Cmetu05g1605 . Hepe08g2589 . . Cla06g00845 Cam06g0911 Cec06g0919 Cco06g0947 Clacu06g0912 Cmu06g0879 Cre06g1660 Lsi11g00263 Csa01g01715 Chy02g01878 Cme05g01974
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
Cme06g00575 . 36 259 HSF AT4G17750 56.8 5.0e-62 235.7
Cme03g02164 . 46 246 HSF AT4G17750 52.7 1.5e-58 224.2
Cme05g02050 . 57 249 HSF AT4G17750 50.7 5.0e-46 182.6
Cme11g01528 . 7 114 HSF AT4G17750 65.7 7.1e-40 162.2
Cme03g02056 . 20 118 HSF AT4G17750 71.7 6.0e-39 159.1
Cme07g00343 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cme09g01727 CCT 20 115 HSF AT4G17750 69.8 1.6e-36 151.0
Cme06g02455 . 21 517 HSF AT5G16820 50.9 8.2e-102 367.9
Cme06g00575 . 37 241 HSF AT5G16820 57.0 1.7e-59 227.3
Cme03g02164 . 47 246 HSF AT5G16820 53.1 6.8e-56 215.3
Cme11g01528 . 13 115 HSF AT5G16820 70.9 3.8e-38 156.4
Cme06g02455 . 13 514 HSF AT1G32330 53.8 1.4e-122 436.8
Cme06g00575 . 25 226 HSF AT1G32330 53.5 3.0e-59 226.5
Cme03g02164 . 35 227 HSF AT1G32330 54.1 6.8e-56 215.3
Cme11g01528 . 8 118 HSF AT1G32330 67.0 1.1e-40 164.9
Cme03g02056 . 20 117 HSF AT1G32330 71.4 3.8e-38 156.4
Cme06g00575 . 37 240 HSF AT3G02990 56.7 2.0e-60 230.3
Cme03g02164 . 47 246 HSF AT3G02990 51.7 6.6e-56 215.3
Cme11g01528 . 13 106 HSF AT3G02990 72.3 4.8e-38 156.0
Cme06g00575 . 14 291 HSF AT2G26150 50.2 5.6e-68 255.0
Cme06g02455 . 8 243 HSF AT2G26150 55.7 5.1e-61 231.9
Cme12g01263 CCT,ECH 5 155 HSF AT2G26150 53.3 5.8e-41 165.2
Cme11g01528 . 5 118 HSF AT2G26150 61.4 1.3e-37 154.1
Cme04g02434 . 115 357 HSF AT5G03720 56.7 4.9e-71 265.4
Cme11g01528 . 3 137 HSF AT4G18880 63.0 9.1e-46 181.4
Cme06g00359 . 3 460 HSF AT4G13980 52.3 6.7e-117 417.9
Cme11g01528 . 4 137 HSF AT4G13980 58.2 1.3e-38 157.9
Cme06g00575 . 25 217 HSF AT5G43840 53.9 1.1e-53 207.2
Cme06g00575 . 14 325 HSF AT3G22830 53.1 3.0e-89 325.9
Cme03g02164 . 35 257 HSF AT3G22830 52.4 1.3e-63 240.7
Cme06g02455 . 29 242 HSF AT3G22830 58.9 8.3e-63 238.0
Cme03g02164 . 35 227 HSF AT3G51910 56.5 9.5e-55 210.7
Cme06g00575 . 14 226 HSF AT3G63350 50.9 4.9e-54 208.4
Cme03g02164 . 35 234 HSF AT3G63350 52.7 6.6e-51 198.0
Cme11g01528 . 2 139 HSF AT3G63350 55.1 1.6e-36 150.2
Cme08g00568 . 2 291 HSF AT4G36990 52.0 3.2e-69 258.8
Cme09g01727 CCT 12 299 HSF AT5G62020 50.3 2.4e-59 226.1
Cme09g01727 CCT 16 335 HSF AT4G11660 55.5 2.8e-81 299.3
Cme07g00343 . 16 119 HSF AT4G11660 74.0 1.2e-44 177.6
Cme03g02056 . 16 121 HSF AT4G11660 71.7 1.6e-44 177.2
Cme08g00568 . 2 100 HSF AT4G11660 72.7 5.7e-42 168.7
Cme04g02057 . 24 117 HSF AT4G11660 73.4 9.5e-37 151.4
Cme06g02455 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Cme08g01634 . 39 204 HSF AT2G41690 54.8 1.4e-44 176.8
Cme03g02056 . 19 374 HSF AT1G46264 51.8 2.4e-87 319.3
Cme07g00343 . 19 325 HSF AT1G46264 55.2 1.5e-84 310.1
Cme02g00771 . 18 206 HSF AT1G46264 53.2 7.6e-49 191.4
Cme06g02455 . 33 138 HSF AT1G46264 73.6 3.4e-41 166.0
Cme11g01528 . 5 105 HSF AT1G46264 67.3 3.9e-37 152.5
Cme02g01348 CCT 59 340 HSF AT3G24520 50.2 1.2e-64 243.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001930 2 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 1 65
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40900 PF00447 HSF_DNA-bind 1.90E-28 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01348 Cme_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0