Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01389 | ATGGGTTGCGTTTATTCGAGGGTTTGTATTGGCGAAGCTACAACTCCAAGATCTTCGAGAATTGCCGAAACCCAAAATGCCAAAACCGCCACTGAAATCGATACGATCTCTTCTTCGTCTTCCGATAGCCGAGAACGTGAGACCGGCGACCGACTGAATCAATTGAATTCAAACAACAGAGATTCAGAAGCTGGAATCACGAGACTTTCGAGAGTTTCATCCCAGTTCTTGCCCGCCGAGGGGTCTCGAACCGTTAAAGTTCCTTCTGGAAACTTCGAACTGCGATATTCGTTCCTTTCTCAAAGAGGGTATTATCCTGATGCCCTTGATAAGGCAAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGCCCAGATGATCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATACGGAGCACAATGCTCGCAGTTTGTTAAACGGAAGCTCTGTGAAAATTTGCTTAGGAATAGTAGGTTCCACAGTGATGCGGTTGAGGCCTGTCATGCGGCCTATTTAACAACCAATTCACAGTTACACGCCGATATCTTGGATGATAGCATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTACGACTATATATGTTGCTAATTCAGGTGATTCGAGGGCAGTCATAGCAGAGCGGAGAGGAAAGGAAGTTGTGGCTGTTGACCTTTCGATTGACCAAACTCCGTTTCGAACTGATGAACTGGAACGAGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGATATTCAGTGCTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTGCCCAATGGGATGTACCCTGGCACTGCTTTCACAAGAAGTATTGGTGACTCAATTGCTGAGACTATTGGAGTTGTTGCTACACCTGAAATTGTTGTCCTGGAGCTGACACAGGATCATCCTTTCTTTGTAGTTGCTAGTGATGGGGTATTCGAGTTTCTTTCAAGCCAAACCGTGGTCGACATGGTTTGTAAATATAAAGATCCCCGTGATGCTTGTGCTGCAATTGTGGCCGAGTCTTACAGACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTATTCTTGTGGTGCATATTAATGGGCTCACCAATACGGTTACTAGTGAATCGACAAGATCTGGTGGAGGAGGTTTTGTTCCATCTGCTATTCCTCAAGTCATGGAAGTGACAGGATCAGAGTCTCCCTCTACATTTGGCTGGAATAGAAACAACCGTGCAAGGCAAGATTTGTCTAGGGCACGTCTCCGGGCTATTGAAAGTTCTCTAGAGAATGGTCAAGTCTGGGTGCCTCCATCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTAACTGACTCTCAATGCCAAGTTTTATTGGATTGCATGCAAAGAGTTGAGGTCATCCCTGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTACGTGGTTGGCAGTGGAGAATTTGAAGTCTTGGCAACCCAGGAAGAAAGCCATGGAGAGGTCCCTAGGGTTTTACAACACTACACAGCTGAGAAGCTCTCTTCCTTTGGCGAATTGGCTTTGATGTATAACAAACCACTTCAAGCTTCTGTACGTGCGGTGACAAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAGTTTTCTAACTTGTCATCTTTGAAATTGCTTCGATCTGTGGACCTCTTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGACTGCCTTTCTGAAGTTCAATTCTCAGATGGGGAGCTGATTGTTGATGGGACCGAAGGCTCATGTGCACTGCACATTATTCAGAAGGGGCAAGTGAGGATTACTTTTGATGCAGAGTTAATGAGCAATTCAAATGTTTACAGCTTCAATTATGTCAGTCAAAAAGAGGATGGTGCTGCACAGAGCGGTAACGAGATTTCAGCTATTAGGAAAGAGGGAAGTTATTTTGGCGAGTGGGCACTTCTTGGTGAGCATATCGGCTTCTTACGTGCAGTTGCTGTGGGAGATGTTCTGTGTACTATTTTAACGAAGGAAAAGTTTGAATCAGTTGTTGGCTCCTTACCAAAGCTCTCTCAAGATGATCAAAAGGCGAAAGAACACTCTTCAAACTCTCTCCATCAGTCTGCCAAATTTATTGATATTTCAGCTCTTTCTAAAGTTGAGCTCTCTGATCTGGAGTGGAAAATGTGTTTATTTTCCACGGAATACAGTGAAATTGGGCTAGTTCAGTTAAGGAACACAGCAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTTGAAGGAGAAAAATCTTATGAAGACTATCAGTTCTTCAGCTTGTGTGCCGGAACTTCTTTGCACTTGTTTTGATCAATCACATGCTGGCATATTGCTAAAGACATGCCTGGCTTGTCCTTTGTCTTCGATACTTCACGTCCCACTCGATGAATCTTCTGCACGTTTCTTTGCAGCCTCTCTTGTTATGGCGTTGGAGGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATTTCCCCTGATGTTCTAATGTTGGATCAAACCGGACACATACAGTTGGTAGACTTCAGATTTGGGAAAAAGACTTTGGGTGAGAGAACATATACTATTTGTGGGATGGCCGACTTTTTAGCACCTGAGATAGTTCAAGGCAATGGTCATGGCTTTGCTGCTGACTGGTGGGCATTAGGAGTCCTAATCCATTTCATGCTGAAATGTGAAATGCCATTTGGATCATGGCGACAAAGCGAGCTTGATACTTTTTCGAAGATTGCAAAAGGTCAACTAAGTCTTCCCCAGATTTTCAGTCCTGAAGCAATTGATCTCATCACCAAGTTACTTGAAGTCGATGAGAAGAAAAGACTTGGAAACGAGAACCAAAACGCTGTTAGAAGTCATACATGGTTTGATGGCGTTGATTGGAAGGGGATCCGTGAGGGTACCTTTCCCGTTCCTGAAACAATAACTTCTCGTGTAGCTCAATATTTGGAGAGCTACCCTGAAAATTGCAGTGCTTCGTTAACTAAACCACCTCAAGATCTTGAAGAACAGGACGTCCCTGAGTGGATCAACGACTGGTAG | 3252 | 44.13 | MGCVYSRVCIGEATTPRSSRIAETQNAKTATEIDTISSSSSDSRERETGDRLNQLNSNNRDSEAGITRLSRVSSQFLPAEGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEYGAQCSQFVKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGTTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDIQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTQDHPFFVVASDGVFEFLSSQTVVDMVCKYKDPRDACAAIVAESYRLWLQFETRTDDITILVVHINGLTNTVTSESTRSGGGGFVPSAIPQVMEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSHIADCLSEVQFSDGELIVDGTEGSCALHIIQKGQVRITFDAELMSNSNVYSFNYVSQKEDGAAQSGNEISAIRKEGSYFGEWALLGEHIGFLRAVAVGDVLCTILTKEKFESVVGSLPKLSQDDQKAKEHSSNSLHQSAKFIDISALSKVELSDLEWKMCLFSTEYSEIGLVQLRNTAETMLSLKRFTRQKVKRLGLEAQVLKEKNLMKTISSSACVPELLCTCFDQSHAGILLKTCLACPLSSILHVPLDESSARFFAASLVMALEDLHKLGVLHRGISPDVLMLDQTGHIQLVDFRFGKKTLGERTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIHFMLKCEMPFGSWRQSELDTFSKIAKGQLSLPQIFSPEAIDLITKLLEVDEKKRLGNENQNAVRSHTWFDGVDWKGIREGTFPVPETITSRVAQYLESYPENCSASLTKPPQDLEEQDVPEWINDW | 1083 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 20104680 | 20111386 | + | MELO3C024635.2.1 | Cme02g01389 | 321278 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01389 | 1083 | SMART | PP2C_4 | 91 | 383 | IPR001932 | - | |
Cme02g01389 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 501 | 515 | - | - | |
Cme02g01389 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 516 | 530 | - | - | |
Cme02g01389 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 551 | 560 | - | - | |
Cme02g01389 | 1083 | PRINTS | cAMP-dependent protein kinase signature | 726 | 738 | - | - | |
Cme02g01389 | 1083 | Gene3D | Jelly Rolls | 449 | 588 | IPR014710 | - | |
Cme02g01389 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 461 | 589 | IPR018490 | - | |
Cme02g01389 | 1083 | SUPERFAMILY | Protein kinase-like (PK-like) | 795 | 1057 | IPR011009 | - | |
Cme02g01389 | 1083 | CDD | CAP_ED | 480 | 588 | IPR000595 | - | |
Cme02g01389 | 1083 | ProSitePatterns | PPM-type phosphatase domain signature. | 131 | 139 | IPR000222 | GO:0043169 | |
Cme02g01389 | 1083 | MobiDBLite | consensus disorder prediction | 20 | 64 | - | - | |
Cme02g01389 | 1083 | CDD | PP2Cc | 111 | 385 | IPR001932 | - | |
Cme02g01389 | 1083 | Pfam | Protein phosphatase 2C | 122 | 363 | IPR001932 | - | |
Cme02g01389 | 1083 | Gene3D | Phosphorylase Kinase; domain 1 | 770 | 856 | - | - | |
Cme02g01389 | 1083 | CDD | CAP_ED | 606 | 738 | IPR000595 | - | |
Cme02g01389 | 1083 | Gene3D | Jelly Rolls | 593 | 752 | IPR014710 | - | |
Cme02g01389 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 606 | 731 | IPR000595 | - | |
Cme02g01389 | 1083 | ProSiteProfiles | Protein kinase domain profile. | 771 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01389 | 1083 | SMART | serkin_6 | 782 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01389 | 1083 | ProSiteProfiles | PPM-type phosphatase domain profile. | 95 | 385 | IPR001932 | - | |
Cme02g01389 | 1083 | SUPERFAMILY | cAMP-binding domain-like | 599 | 737 | IPR018490 | - | |
Cme02g01389 | 1083 | SUPERFAMILY | PP2C-like | 83 | 387 | IPR036457 | - | |
Cme02g01389 | 1083 | Pfam | Protein kinase domain | 794 | 1026 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme02g01389 | 1083 | MobiDBLite | consensus disorder prediction | 20 | 38 | - | - | |
Cme02g01389 | 1083 | Gene3D | Transferase(Phosphotransferase) domain 1 | 857 | 1041 | - | - | |
Cme02g01389 | 1083 | Gene3D | - | 89 | 386 | IPR036457 | - | |
Cme02g01389 | 1083 | SMART | cnmp_10 | 606 | 745 | IPR000595 | - | |
Cme02g01389 | 1083 | SMART | cnmp_10 | 480 | 603 | IPR000595 | - | |
Cme02g01389 | 1083 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 480 | 588 | IPR000595 | - | |
Cme02g01389 | 1083 | PANTHER | CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE | 22 | 1083 | - | - | |
Cme02g01389 | 1083 | PANTHER | PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN | 22 | 1083 | - | - | |
Cme02g01389 | 1083 | Pfam | Cyclic nucleotide-binding domain | 500 | 588 | IPR000595 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01389 | Cme-Chr2:20104680 | Cme06g00664 | Cme-Chr6:4280650 | 3.74E-140 | dispersed | |
Cme05g01581 | Cme-Chr5:25027632 | Cme02g01389 | Cme-Chr2:20104680 | 2.87E-28 | dispersed | |
Cme02g01389 | Cme-Chr2:20104680 | Cme11g01952 | Cme-Chr11:27581502 | 2.93E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
64693 | PF00069 | Pkinase | 2.20E-32 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01389 | - | - | csv:101217861 | 2089.69 |