Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01389 ATGGGTTGCGTTTATTCGAGGGTTTGTATTGGCGAAGCTACAACTCCAAGATCTTCGAGAATTGCCGAAACCCAAAATGCCAAAACCGCCACTGAAATCGATACGATCTCTTCTTCGTCTTCCGATAGCCGAGAACGTGAGACCGGCGACCGACTGAATCAATTGAATTCAAACAACAGAGATTCAGAAGCTGGAATCACGAGACTTTCGAGAGTTTCATCCCAGTTCTTGCCCGCCGAGGGGTCTCGAACCGTTAAAGTTCCTTCTGGAAACTTCGAACTGCGATATTCGTTCCTTTCTCAAAGAGGGTATTATCCTGATGCCCTTGATAAGGCAAATCAAGACAGTTTTTGCATCCACACCCCATTTGGGAACAGCCCAGATGATCATTTCTTTGGGGTTTTCGATGGGCATGGGGAATACGGAGCACAATGCTCGCAGTTTGTTAAACGGAAGCTCTGTGAAAATTTGCTTAGGAATAGTAGGTTCCACAGTGATGCGGTTGAGGCCTGTCATGCGGCCTATTTAACAACCAATTCACAGTTACACGCCGATATCTTGGATGATAGCATGAGTGGTACTACTGCTATTACTGTTTTAGTTAGAGGTACGACTATATATGTTGCTAATTCAGGTGATTCGAGGGCAGTCATAGCAGAGCGGAGAGGAAAGGAAGTTGTGGCTGTTGACCTTTCGATTGACCAAACTCCGTTTCGAACTGATGAACTGGAACGAGTTAAGCTTTGTGGTGCTAGAGTTCTTACACTTGATCAGATTGAGGGGCTGAAGAACCCTGATATTCAGTGCTGGGGTACTGAAGAAGGAGATGATGGTGATCCTCCTAGGCTTTGGGTGCCCAATGGGATGTACCCTGGCACTGCTTTCACAAGAAGTATTGGTGACTCAATTGCTGAGACTATTGGAGTTGTTGCTACACCTGAAATTGTTGTCCTGGAGCTGACACAGGATCATCCTTTCTTTGTAGTTGCTAGTGATGGGGTATTCGAGTTTCTTTCAAGCCAAACCGTGGTCGACATGGTTTGTAAATATAAAGATCCCCGTGATGCTTGTGCTGCAATTGTGGCCGAGTCTTACAGACTTTGGCTTCAATTTGAGACTCGAACAGATGATATCACTATTCTTGTGGTGCATATTAATGGGCTCACCAATACGGTTACTAGTGAATCGACAAGATCTGGTGGAGGAGGTTTTGTTCCATCTGCTATTCCTCAAGTCATGGAAGTGACAGGATCAGAGTCTCCCTCTACATTTGGCTGGAATAGAAACAACCGTGCAAGGCAAGATTTGTCTAGGGCACGTCTCCGGGCTATTGAAAGTTCTCTAGAGAATGGTCAAGTCTGGGTGCCTCCATCTCCAGCTCACAGGAAGTCATGGGAAGAAGAAGCACATATTGAACGAGCATTGCACGACCATTTCCTCTTCAGAAAACTAACTGACTCTCAATGCCAAGTTTTATTGGATTGCATGCAAAGAGTTGAGGTCATCCCTGGGCAAATTGTAGTCGAACAAGGTGGCGAAGGTGACTGTTTTTACGTGGTTGGCAGTGGAGAATTTGAAGTCTTGGCAACCCAGGAAGAAAGCCATGGAGAGGTCCCTAGGGTTTTACAACACTACACAGCTGAGAAGCTCTCTTCCTTTGGCGAATTGGCTTTGATGTATAACAAACCACTTCAAGCTTCTGTACGTGCGGTGACAAGTGGGACACTTTGGGCTTTGAAAAGAGAGGACTTTCGTGGAATTCTTATATCAGAGTTTTCTAACTTGTCATCTTTGAAATTGCTTCGATCTGTGGACCTCTTGTCGAAGTTAACAATCTTGCAATTGAGTCACATTGCAGACTGCCTTTCTGAAGTTCAATTCTCAGATGGGGAGCTGATTGTTGATGGGACCGAAGGCTCATGTGCACTGCACATTATTCAGAAGGGGCAAGTGAGGATTACTTTTGATGCAGAGTTAATGAGCAATTCAAATGTTTACAGCTTCAATTATGTCAGTCAAAAAGAGGATGGTGCTGCACAGAGCGGTAACGAGATTTCAGCTATTAGGAAAGAGGGAAGTTATTTTGGCGAGTGGGCACTTCTTGGTGAGCATATCGGCTTCTTACGTGCAGTTGCTGTGGGAGATGTTCTGTGTACTATTTTAACGAAGGAAAAGTTTGAATCAGTTGTTGGCTCCTTACCAAAGCTCTCTCAAGATGATCAAAAGGCGAAAGAACACTCTTCAAACTCTCTCCATCAGTCTGCCAAATTTATTGATATTTCAGCTCTTTCTAAAGTTGAGCTCTCTGATCTGGAGTGGAAAATGTGTTTATTTTCCACGGAATACAGTGAAATTGGGCTAGTTCAGTTAAGGAACACAGCAGAAACTATGCTTAGTTTAAAAAGGTTTACAAGACAGAAGGTCAAAAGGCTGGGACTTGAAGCACAAGTTTTGAAGGAGAAAAATCTTATGAAGACTATCAGTTCTTCAGCTTGTGTGCCGGAACTTCTTTGCACTTGTTTTGATCAATCACATGCTGGCATATTGCTAAAGACATGCCTGGCTTGTCCTTTGTCTTCGATACTTCACGTCCCACTCGATGAATCTTCTGCACGTTTCTTTGCAGCCTCTCTTGTTATGGCGTTGGAGGATTTGCACAAGCTTGGTGTTCTCCACAGAGGAATTTCCCCTGATGTTCTAATGTTGGATCAAACCGGACACATACAGTTGGTAGACTTCAGATTTGGGAAAAAGACTTTGGGTGAGAGAACATATACTATTTGTGGGATGGCCGACTTTTTAGCACCTGAGATAGTTCAAGGCAATGGTCATGGCTTTGCTGCTGACTGGTGGGCATTAGGAGTCCTAATCCATTTCATGCTGAAATGTGAAATGCCATTTGGATCATGGCGACAAAGCGAGCTTGATACTTTTTCGAAGATTGCAAAAGGTCAACTAAGTCTTCCCCAGATTTTCAGTCCTGAAGCAATTGATCTCATCACCAAGTTACTTGAAGTCGATGAGAAGAAAAGACTTGGAAACGAGAACCAAAACGCTGTTAGAAGTCATACATGGTTTGATGGCGTTGATTGGAAGGGGATCCGTGAGGGTACCTTTCCCGTTCCTGAAACAATAACTTCTCGTGTAGCTCAATATTTGGAGAGCTACCCTGAAAATTGCAGTGCTTCGTTAACTAAACCACCTCAAGATCTTGAAGAACAGGACGTCCCTGAGTGGATCAACGACTGGTAG 3252 44.13 MGCVYSRVCIGEATTPRSSRIAETQNAKTATEIDTISSSSSDSRERETGDRLNQLNSNNRDSEAGITRLSRVSSQFLPAEGSRTVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGNSPDDHFFGVFDGHGEYGAQCSQFVKRKLCENLLRNSRFHSDAVEACHAAYLTTNSQLHADILDDSMSGTTAITVLVRGTTIYVANSGDSRAVIAERRGKEVVAVDLSIDQTPFRTDELERVKLCGARVLTLDQIEGLKNPDIQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVATPEIVVLELTQDHPFFVVASDGVFEFLSSQTVVDMVCKYKDPRDACAAIVAESYRLWLQFETRTDDITILVVHINGLTNTVTSESTRSGGGGFVPSAIPQVMEVTGSESPSTFGWNRNNRARQDLSRARLRAIESSLENGQVWVPPSPAHRKSWEEEAHIERALHDHFLFRKLTDSQCQVLLDCMQRVEVIPGQIVVEQGGEGDCFYVVGSGEFEVLATQEESHGEVPRVLQHYTAEKLSSFGELALMYNKPLQASVRAVTSGTLWALKREDFRGILISEFSNLSSLKLLRSVDLLSKLTILQLSHIADCLSEVQFSDGELIVDGTEGSCALHIIQKGQVRITFDAELMSNSNVYSFNYVSQKEDGAAQSGNEISAIRKEGSYFGEWALLGEHIGFLRAVAVGDVLCTILTKEKFESVVGSLPKLSQDDQKAKEHSSNSLHQSAKFIDISALSKVELSDLEWKMCLFSTEYSEIGLVQLRNTAETMLSLKRFTRQKVKRLGLEAQVLKEKNLMKTISSSACVPELLCTCFDQSHAGILLKTCLACPLSSILHVPLDESSARFFAASLVMALEDLHKLGVLHRGISPDVLMLDQTGHIQLVDFRFGKKTLGERTYTICGMADFLAPEIVQGNGHGFAADWWALGVLIHFMLKCEMPFGSWRQSELDTFSKIAKGQLSLPQIFSPEAIDLITKLLEVDEKKRLGNENQNAVRSHTWFDGVDWKGIREGTFPVPETITSRVAQYLESYPENCSASLTKPPQDLEEQDVPEWINDW 1083
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20104680 20111386 + MELO3C024635.2.1 Cme02g01389 321278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01389 1083 SMART PP2C_4 91 383 IPR001932 -
Cme02g01389 1083 PRINTS cAMP-dependent protein kinase signature 501 515 - -
Cme02g01389 1083 PRINTS cAMP-dependent protein kinase signature 516 530 - -
Cme02g01389 1083 PRINTS cAMP-dependent protein kinase signature 551 560 - -
Cme02g01389 1083 PRINTS cAMP-dependent protein kinase signature 726 738 - -
Cme02g01389 1083 Gene3D Jelly Rolls 449 588 IPR014710 -
Cme02g01389 1083 SUPERFAMILY cAMP-binding domain-like 461 589 IPR018490 -
Cme02g01389 1083 SUPERFAMILY Protein kinase-like (PK-like) 795 1057 IPR011009 -
Cme02g01389 1083 CDD CAP_ED 480 588 IPR000595 -
Cme02g01389 1083 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
Cme02g01389 1083 MobiDBLite consensus disorder prediction 20 64 - -
Cme02g01389 1083 CDD PP2Cc 111 385 IPR001932 -
Cme02g01389 1083 Pfam Protein phosphatase 2C 122 363 IPR001932 -
Cme02g01389 1083 Gene3D Phosphorylase Kinase; domain 1 770 856 - -
Cme02g01389 1083 CDD CAP_ED 606 738 IPR000595 -
Cme02g01389 1083 Gene3D Jelly Rolls 593 752 IPR014710 -
Cme02g01389 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 606 731 IPR000595 -
Cme02g01389 1083 ProSiteProfiles Protein kinase domain profile. 771 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01389 1083 SMART serkin_6 782 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01389 1083 ProSiteProfiles PPM-type phosphatase domain profile. 95 385 IPR001932 -
Cme02g01389 1083 SUPERFAMILY cAMP-binding domain-like 599 737 IPR018490 -
Cme02g01389 1083 SUPERFAMILY PP2C-like 83 387 IPR036457 -
Cme02g01389 1083 Pfam Protein kinase domain 794 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01389 1083 MobiDBLite consensus disorder prediction 20 38 - -
Cme02g01389 1083 Gene3D Transferase(Phosphotransferase) domain 1 857 1041 - -
Cme02g01389 1083 Gene3D - 89 386 IPR036457 -
Cme02g01389 1083 SMART cnmp_10 606 745 IPR000595 -
Cme02g01389 1083 SMART cnmp_10 480 603 IPR000595 -
Cme02g01389 1083 ProSiteProfiles cAMP/cGMP binding motif profile. 480 588 IPR000595 -
Cme02g01389 1083 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 22 1083 - -
Cme02g01389 1083 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 22 1083 - -
Cme02g01389 1083 Pfam Cyclic nucleotide-binding domain 500 588 IPR000595 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01389 Cme-Chr2:20104680 Cme06g00664 Cme-Chr6:4280650 3.74E-140 dispersed
Cme05g01581 Cme-Chr5:25027632 Cme02g01389 Cme-Chr2:20104680 2.87E-28 dispersed
Cme02g01389 Cme-Chr2:20104680 Cme11g01952 Cme-Chr11:27581502 2.93E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64693 PF00069 Pkinase 2.20E-32 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01389 - - csv:101217861 2089.69