Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01473 ATGGAGAACGATTCTACAATTTTAAACTCATCTCCGCCGCCATCGCCGTCATCATCTGGCAGTTTATCACCTCCATCCTCCTCATCGCCTGTGGTCGAATCGAACCGGAAACGACTCAAACGGCCTAGGGAGAATAACAATAACAGCAAACACCCGGTCTTCCGTGGGGTCCGAATGAGGGCATGGGGAAAATGGGTTTCCGAAATTCGTGAACCACGAAAAAAAAGCCGGATCTGGCTCGGTACTTTCTCCACCCCTGAAATGGCCGCACGTGCCCACGACGTTGCCGCCCTCACCATTAAAGGCACCTCCGCCATTCTCAACTTCCCCGAACTTGCCCACCAATTCCCCCGTCCAGCTTCCACTTCCCCTCGTGACGTTCAGGCCGCCGCCGCTAAAGCCGCCTCCATGGAAATCCCAACTCCCCCACTTTCTTCTTCTTCTTCCACTTCTACTTCTACTTCTACTACTTCTTCTTCTTCCTCTTCTTCTTCCTCTTTATGTCCTTCCTCGCCGGAGGAACTGACTGAAATCGTGGAGCTTCCGAGTTTAGGAACGAGTTATGAAACAGCGGAGTTAGGAAACGAGTTCGTATTTGTTGACTCAGTGGAAGGTTGGCTTTACTCTTACCCATGGTATAACAGAGTGAGTAATGCAGAGCAAGTAAAGGAAGTACAAGAGGATTATGGATTATTCTTCAAAGACCAGATTCTAATGGCGGATTATACCGATACTTTCTTATGGCAAAATTAA 753 48.87 MENDSTILNSSPPPSPSSSGSLSPPSSSSPVVESNRKRLKRPRENNNNSKHPVFRGVRMRAWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALTIKGTSAILNFPELAHQFPRPASTSPRDVQAAAAKAASMEIPTPPLSSSSSTSTSTSTTSSSSSSSSSLCPSSPEELTEIVELPSLGTSYETAELGNEFVFVDSVEGWLYSYPWYNRVSNAEQVKEVQEDYGLFFKDQILMADYTDTFLWQN 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21525077 21525938 - MELO3C024714.2.1 Cme02g01473 321362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01473 250 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Cme02g01473 250 MobiDBLite consensus disorder prediction 1 52 - -
Cme02g01473 250 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Cme02g01473 250 MobiDBLite consensus disorder prediction 1 33 - -
Cme02g01473 250 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Cme02g01473 250 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Cme02g01473 250 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Cme02g01473 250 MobiDBLite consensus disorder prediction 117 172 - -
Cme02g01473 250 MobiDBLite consensus disorder prediction 140 172 - -
Cme02g01473 250 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Cme02g01473 250 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 249 - -
Cme02g01473 250 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 249 - -
Cme02g01473 250 MobiDBLite consensus disorder prediction 34 48 - -
Cme02g01473 250 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Cme02g01473 250 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g02722 Cme-Chr1:34431575 Cme02g01473 Cme-Chr2:21525077 2.44E-46 dispersed
Cme02g01473 Cme-Chr2:21525077 Cme04g00177 Cme-Chr4:1321278 1.87E-53 dispersed
Cme09g01717 Cme-Chr9:21805168 Cme02g01473 Cme-Chr2:21525077 5.08E-30 dispersed
Cme02g01473 Cme-Chr2:21525077 Cme05g01995 Cme-Chr5:28458946 9.01E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40906 PF00847 AP2 2.90E-13 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01473 K09286 - csv:101219745 409.838