Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01495 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTAATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGATCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGAAGGCTTGCTTCGCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAACCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAGCAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGAAAAAGAAGGATCGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGATCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGGGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGGCAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGCGATGCCATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTGTTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCATCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCAGATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTACTTAGGAAAAGATCAAAAGTGCTACAGAGAGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGATAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATGAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAACGCAAAGTATCCAATTGATGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCAACTGCTGTCATCCCCACAATAGATGACTTTGAAGAAACTGAGATGGAGGAGGCCGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTGGAAGCGCACAGAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCGAGTGTTGCTGGATATCATGAGAAATTAGCCGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAAGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAAGCAACTTTCAAGCAGATAGACACTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGCTATCAGCTGCTTCACACCGGATTAGTGGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACACTTCAGTTACGTTATGGAAACCTTTTGGAGGACTTGGAAAAGATGGAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGAGATCGCTGCAGAGAGTCACGCTCTTCAGTTGGCTGAGGTTGAGCCTAACCAAAACGTTGGAGAAAATGCTGATAGTTCCGAAGCCATGTCTGCATCAGTAGCGGCAGTTGATCGTGAAAATTCAGTGCCTGTTCCCACCTCCATTGAATTAATGGGTGAACAACTAAACTCATCTGTGGGACATGAAAACAAAACTAACAAGGCCATGGATATCCACACTGAAAAGGAAAGTGTAGCAGTGGATTTGGATATTGGTTTGTCTGATAACAAACTACCTTCTGCAGCGGGAGATGCATCACTGCCTGACAATGGCTTTGAAGAGTCTGATAAAAGTCAAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTGATGCAAATGGCATGTCAGATTCGGTTGATGGTGCAACTATTGAAAATGATAAATGTAGTACTGATATTGTCGAGGAAGTAAAAGATGTCGAAACTCAGCAGCCTGTGATTGAAACTGAAAATAACTCAGATATGCATTCGATTGATCTGGATGCAGCTGCACCTGCATCTTCTTATGAGGATGGCCCTGTGAATGATGGCAACACAGGAGAAATGGAATCAAATGTCTAG 3057 43.8 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAGGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDADDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMMRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAVIPTIDDFEETEMEEADYLIKEEARYLCAAMGHENESLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGYHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLEDLEKMEKIMVDRKAQAQKEEEIAAESHALQLAEVEPNQNVGENADSSEAMSASVAAVDRENSVPVPTSIELMGEQLNSSVGHENKTNKAMDIHTEKESVAVDLDIGLSDNKLPSAAGDASLPDNGFEESDKSQTIDVPSQELLGPDANGMSDSVDGATIENDKCSTDIVEEVKDVETQQPVIETENNSDMHSIDLDAAAPASSYEDGPVNDGNTGEMESNV 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21983990 21999604 + MELO3C017522.2.1 Cme02g01495 321384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01495 1018 Gene3D - 5 58 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 157 176 - -
Cme02g01495 1018 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Cme02g01495 1018 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cme02g01495 1018 Coils Coil 796 816 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 600 621 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 911 1018 - -
Cme02g01495 1018 Coils Coil 167 187 - -
Cme02g01495 1018 SMART sant 58 105 IPR001005 -
Cme02g01495 1018 SMART sant 6 55 IPR001005 -
Cme02g01495 1018 Gene3D - 59 114 - -
Cme02g01495 1018 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cme02g01495 1018 PANTHER - 1 901 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 1004 1018 - -
Cme02g01495 1018 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 400 414 - -
Cme02g01495 1018 CDD SANT 10 53 IPR001005 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 961 975 - -
Cme02g01495 1018 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cme02g01495 1018 CDD SANT_CDC5_II 55 106 - -
Cme02g01495 1018 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 382 421 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 212 234 - -
Cme02g01495 1018 Pfam Myb-like DNA-binding domain 10 70 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 110 150 - -
Cme02g01495 1018 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 901 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01495 Cme-Chr2:21983990 Cme04g02621 Cme-Chr4:32085347 1.35E-10 dispersed
Cme02g01495 Cme-Chr2:21983990 Cme03g01729 Cme-Chr3:25877481 2.53E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40907 PF11831 Myb_Cef 1.90E-57 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01495 K12860 - csv:101205030 1845.86