Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01495 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTTCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTAATGCCAACCCAGTGGAGAACTATTGCACCAATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTGTTAAGGATGACAATTACGAACCAGGAGATGATCCAAGAAAATTGCGCCCTGGAGAAATTGATCCAAACCCAGAGTCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAGGCCAGAAGGCTTGCTTCGCTGCAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAAAGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAACCTCCTCCAGGATTTTTTGATGTTAGTGAGGAAGATAGACCAGTGGAGCAGCCCAAGTTTCCAACAACGATTGAAGAACTTGAAGGAAAAAGAAGGATCGATGTAGAAGCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTGCTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGATCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTAGCTGGTAATGAAGAGCTTGCAGGGGGAAGTGGTGCTACACGAGCTTTGCTTGCAAATTATGCACAGACACCACGGCAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGCGATGCCATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTGTTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCTATGTTAACACCATCAGCAACTCCTGGTGGTGTTGGTCTCACTCCTCGGAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCAGATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGATTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGATGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTACTTAGGAAAAGATCAAAAGTGCTACAGAGAGAGCTTCCTCGGCCTCCTACTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGATAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATGAGAAAGGAACTTCTTGCTTTGTTAGAGCATGATAACGCAAAGTATCCAATTGATGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCAACTGCTGTCATCCCCACAATAGATGACTTTGAAGAAACTGAGATGGAGGAGGCCGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGCTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTGGAAGCGCACAGAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCGAGTGTTGCTGGATATCATGAGAAATTAGCCGCCTTGCAGGATGAATTTGAGTATGTTAAAAAGAAAATGGATGATGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAAGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAAGCAACTTTCAAGCAGATAGACACTGCAGCTACAGAGCTGGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGCTATCAGCTGCTTCACACCGGATTAGTGGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAGAGAACACTTCAGTTACGTTATGGAAACCTTTTGGAGGACTTGGAAAAGATGGAGAAAATCATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGAGATCGCTGCAGAGAGTCACGCTCTTCAGTTGGCTGAGGTTGAGCCTAACCAAAACGTTGGAGAAAATGCTGATAGTTCCGAAGCCATGTCTGCATCAGTAGCGGCAGTTGATCGTGAAAATTCAGTGCCTGTTCCCACCTCCATTGAATTAATGGGTGAACAACTAAACTCATCTGTGGGACATGAAAACAAAACTAACAAGGCCATGGATATCCACACTGAAAAGGAAAGTGTAGCAGTGGATTTGGATATTGGTTTGTCTGATAACAAACTACCTTCTGCAGCGGGAGATGCATCACTGCCTGACAATGGCTTTGAAGAGTCTGATAAAAGTCAAACCATTGATGTTCCTTCTCAAGAACTCTTGGGCCCTGATGCAAATGGCATGTCAGATTCGGTTGATGGTGCAACTATTGAAAATGATAAATGTAGTACTGATATTGTCGAGGAAGTAAAAGATGTCGAAACTCAGCAGCCTGTGATTGAAACTGAAAATAACTCAGATATGCATTCGATTGATCTGGATGCAGCTGCACCTGCATCTTCTTATGAGGATGGCCCTGTGAATGATGGCAACACAGGAGAAATGGAATCAAATGTCTAG 3057 43.8 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVSEEDRPVEQPKFPTTIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAGGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDADDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLMRADGDKSSFVPPTPIEQADEMMRKELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPTAVIPTIDDFEETEMEEADYLIKEEARYLCAAMGHENESLDEFVEAHRTCLNDLMYFPTRNAYGLSSVAGYHEKLAALQDEFEYVKKKMDDDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQELSAASHRISGIWEEVQKQKELERTLQLRYGNLLEDLEKMEKIMVDRKAQAQKEEEIAAESHALQLAEVEPNQNVGENADSSEAMSASVAAVDRENSVPVPTSIELMGEQLNSSVGHENKTNKAMDIHTEKESVAVDLDIGLSDNKLPSAAGDASLPDNGFEESDKSQTIDVPSQELLGPDANGMSDSVDGATIENDKCSTDIVEEVKDVETQQPVIETENNSDMHSIDLDAAAPASSYEDGPVNDGNTGEMESNV 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21983990 21999604 + MELO3C017522.2.1 Cme02g01495 321384

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01495 1018 Gene3D - 5 58 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 157 176 - -
Cme02g01495 1018 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Cme02g01495 1018 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Cme02g01495 1018 Coils Coil 796 816 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 600 621 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 911 1018 - -
Cme02g01495 1018 Coils Coil 167 187 - -
Cme02g01495 1018 SMART sant 58 105 IPR001005 -
Cme02g01495 1018 SMART sant 6 55 IPR001005 -
Cme02g01495 1018 Gene3D - 59 114 - -
Cme02g01495 1018 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Cme02g01495 1018 PANTHER - 1 901 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 1004 1018 - -
Cme02g01495 1018 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 400 414 - -
Cme02g01495 1018 CDD SANT 10 53 IPR001005 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 961 975 - -
Cme02g01495 1018 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Cme02g01495 1018 CDD SANT_CDC5_II 55 106 - -
Cme02g01495 1018 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 382 421 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 212 234 - -
Cme02g01495 1018 Pfam Myb-like DNA-binding domain 10 70 - -
Cme02g01495 1018 MobiDBLite consensus disorder prediction 110 150 - -
Cme02g01495 1018 PANTHER CELL DIVISION CYCLE 5-LIKE PROTEIN 1 901 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01495 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101205030 1845.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01495 Cme-Chr2:21983990 Cme04g02621 Cme-Chr4:32085347 1.35E-10 dispersed
Cme02g01495 Cme-Chr2:21983990 Cme03g01729 Cme-Chr3:25877481 2.53E-11 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g01495 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.4 0.0e+00 1208.0
Cme06g02196 . 294 746 MYB-Related Transcription Factor Family AT3G18100 57.5 1.5e-149 526.9
Cme06g02196 . 294 746 MYB-Related Transcription Factor Family AT3G18100 57.5 1.5e-149 526.9
Cme02g01495 . 1 850 MYB-Related Transcription Factor Family AT1G09770 76.4 0.0e+00 1208.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40907 PF11831 Myb_Cef 1.90E-57 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01495 Cme_Chr02 FPKM 23.00313 26.037363 111.288826 116.255226 16.254269 11.842974 16.218132 126.432732 129.038269 138.587036