Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01520 ATGGGACTTGACGGTGCCACTGTTCTCAATGGTTTCCCCGGCAGACCCTGCCATTTCTGCAAGACTCACCCTGCCGCCGTCTATTGCCGACCTGACTCTGCTTTTCTCTGTGTCTCCTGCGACGCCAAAATTCACTGCGCCAACAAACTCGCCTCTCGCCACGAACGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCTGCCGTGGTCATGTGCAAAGCTGATGCTGCGGCTCTTTGTGTCACTTGCGATGCCGAAATTCACTCTGCTAACCCACTGGCCAGCCGCCACGAGCGTGTCCCCGTCGAGCCTTTTTTCGACACGGCCGAATCAGTCGTTAAATCCTCTTCTGTTTTGAATTTTTTAGTCCCTAATGAAACTAATGTCTGCCTCGGTGCCCATTACCATGAGGAGGTGGAGGTTGCTTCCTGGCTTTTATCCAACTCGTCTTTCAACTCTAAGCTCGTCCACGGCCCTGAAATCAAACCCCTTGGAGGTGATCATTTGTTCTTCACCGAAATGGATTCTTTTATTGATTTTGAATATCCCAATTCAGTCAGCGATGATCACAACGATATTAACGACAGCGTCGTCCCTGTCCAGACGAAGCCACACCCAACGCCGGTTATTAACCATAGCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGTAGATCCAAGCTCAATTCATTCGGATATCAACCTCAATCACTGAGCCACAGTGTTTCCTCTTCCTCCTTAGACGTGGGAGTTGTTCCACAAGCAAACTCAATGTCTGAGATATCGTACCCAATGGGTCAAACTGTTGATTCGGGGCTTCCGTTGTCAGGATCCGGAAACCAAGCGACACAATTGTGTGGAATAGATAGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAGTCCGATACGCATCAAGAAAAGCTTATGCAGAAACCCGACCAAGGATCAAAGGCCGTTTCGCGAAACGAACCGATATGGTATCAGAGGTTGATGAAATCTATGGCTCAGCAGCTTCACCTGTGTTCCTTACGGACGCTCAATACGGAATCGTACCAACGTTTTGA 1095 49.04 MGLDGATVLNGFPGRPCHFCKTHPAAVYCRPDSAFLCVSCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDAEIHSANPLASRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNVCLGAHYHEEVEVASWLLSNSSFNSKLVHGPEIKPLGGDHLFFTEMDSFIDFEYPNSVSDDHNDINDSVVPVQTKPHPTPVINHSHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLDVGVVPQANSMSEISYPMGQTVDSGLPLSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRTDMVSEVDEIYGSAASPVFLTDAQYGIVPTF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22258730 22260399 - MELO3C017501.2.1 Cme02g01520 321409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01520 364 CDD Bbox1_BBX-like 16 59 - -
Cme02g01520 364 ProSiteProfiles CCT domain profile. 291 333 IPR010402 GO:0005515
Cme02g01520 364 ProSiteProfiles Zinc finger B-box type profile. 17 59 IPR000315 GO:0008270
Cme02g01520 364 SMART bboxneu5 12 59 IPR000315 GO:0008270
Cme02g01520 364 SMART bboxneu5 60 102 IPR000315 GO:0008270
Cme02g01520 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 13 364 - -
Cme02g01520 364 Pfam CCT motif 291 333 IPR010402 GO:0005515
Cme02g01520 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 364 IPR045281 GO:0009909
Cme02g01520 364 CDD Bbox1_BBX-like 60 102 - -
Cme02g01520 364 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Cme02g01520 364 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01520 Cme05g01392 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01520 Cme-Chr2:22258730 Cme11g00980 Cme-Chr11:13935781 1.08E-30 dispersed
Cme02g01520 Cme-Chr2:22258730 Cme02g01521 Cme-Chr2:22279407 0 tandem
Cme03g01557 Cme-Chr3:24667861 Cme02g01520 Cme-Chr2:22258730 3.27E-102 transposed
Cme07g01072 Cme-Chr7:13281716 Cme02g01520 Cme-Chr2:22258730 1.93E-08 transposed
Cme02g01520 Cme-Chr2:22258730 Cme05g01392 Cme-Chr5:23182545 1.43E-92 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40908 PF00643 zf-B_box 1.80E-07 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01520 - - csv:116401631 672.159