Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01520 ATGGGACTTGACGGTGCCACTGTTCTCAATGGTTTCCCCGGCAGACCCTGCCATTTCTGCAAGACTCACCCTGCCGCCGTCTATTGCCGACCTGACTCTGCTTTTCTCTGTGTCTCCTGCGACGCCAAAATTCACTGCGCCAACAAACTCGCCTCTCGCCACGAACGCGTCTGGATGTGCGAGGTTTGTGAACAAGCTCCTGCCGTGGTCATGTGCAAAGCTGATGCTGCGGCTCTTTGTGTCACTTGCGATGCCGAAATTCACTCTGCTAACCCACTGGCCAGCCGCCACGAGCGTGTCCCCGTCGAGCCTTTTTTCGACACGGCCGAATCAGTCGTTAAATCCTCTTCTGTTTTGAATTTTTTAGTCCCTAATGAAACTAATGTCTGCCTCGGTGCCCATTACCATGAGGAGGTGGAGGTTGCTTCCTGGCTTTTATCCAACTCGTCTTTCAACTCTAAGCTCGTCCACGGCCCTGAAATCAAACCCCTTGGAGGTGATCATTTGTTCTTCACCGAAATGGATTCTTTTATTGATTTTGAATATCCCAATTCAGTCAGCGATGATCACAACGATATTAACGACAGCGTCGTCCCTGTCCAGACGAAGCCACACCCAACGCCGGTTATTAACCATAGCCACTCCCCTGAAAATTGCTACGACATTGATTTTTGTAGATCCAAGCTCAATTCATTCGGATATCAACCTCAATCACTGAGCCACAGTGTTTCCTCTTCCTCCTTAGACGTGGGAGTTGTTCCACAAGCAAACTCAATGTCTGAGATATCGTACCCAATGGGTCAAACTGTTGATTCGGGGCTTCCGTTGTCAGGATCCGGAAACCAAGCGACACAATTGTGTGGAATAGATAGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAGTCCGATACGCATCAAGAAAAGCTTATGCAGAAACCCGACCAAGGATCAAAGGCCGTTTCGCGAAACGAACCGATATGGTATCAGAGGTTGATGAAATCTATGGCTCAGCAGCTTCACCTGTGTTCCTTACGGACGCTCAATACGGAATCGTACCAACGTTTTGA 1095 49.04 MGLDGATVLNGFPGRPCHFCKTHPAAVYCRPDSAFLCVSCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDAEIHSANPLASRHERVPVEPFFDTAESVVKSSSVLNFLVPNETNVCLGAHYHEEVEVASWLLSNSSFNSKLVHGPEIKPLGGDHLFFTEMDSFIDFEYPNSVSDDHNDINDSVVPVQTKPHPTPVINHSHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLDVGVVPQANSMSEISYPMGQTVDSGLPLSGSGNQATQLCGIDREARVLRYREKRKNRKFEKTVRYASRKAYAETRPRIKGRFAKRTDMVSEVDEIYGSAASPVFLTDAQYGIVPTF 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22258730 22260399 - MELO3C017501.2.1 Cme02g01520 321409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01520 364 CDD Bbox1_BBX-like 16 59 - -
Cme02g01520 364 ProSiteProfiles CCT domain profile. 291 333 IPR010402 GO:0005515
Cme02g01520 364 ProSiteProfiles Zinc finger B-box type profile. 17 59 IPR000315 GO:0008270
Cme02g01520 364 SMART bboxneu5 12 59 IPR000315 GO:0008270
Cme02g01520 364 SMART bboxneu5 60 102 IPR000315 GO:0008270
Cme02g01520 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 13 364 - -
Cme02g01520 364 Pfam CCT motif 291 333 IPR010402 GO:0005515
Cme02g01520 364 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 13 364 IPR045281 GO:0009909
Cme02g01520 364 CDD Bbox1_BBX-like 60 102 - -
Cme02g01520 364 ProSiteProfiles Zinc finger B-box type profile. 55 102 IPR000315 GO:0008270
Cme02g01520 364 Pfam B-box zinc finger 57 102 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01520 - - - csv:116401631 672.159
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01520 Cme05g01392 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01520 Cme-Chr2:22258730 Cme11g00980 Cme-Chr11:13935781 1.08E-30 dispersed
Cme02g01520 Cme-Chr2:22258730 Cme02g01521 Cme-Chr2:22279407 0 tandem
Cme03g01557 Cme-Chr3:24667861 Cme02g01520 Cme-Chr2:22258730 3.27E-102 transposed
Cme07g01072 Cme-Chr7:13281716 Cme02g01520 Cme-Chr2:22258730 1.93E-08 transposed
Cme02g01520 Cme-Chr2:22258730 Cme05g01392 Cme-Chr5:23182545 1.43E-92 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1077 . . . . . . . . Cmo10g00449 Cmo11g00414 Cma05g00679 . Car05g00623 . Sed08g0523 Cpe04g01287 Cpe18g00605 Bhi02g00794 Tan09g1648 Cmetu02g0351 . Hepe09g0511 . . Cla11g01201 Cam11g1260 Cec11g1272 Cco11g1273 Clacu11g1418 Cmu11g1240 Cre11g1658 . . Cone11ag0169 Cone18ag1317 Lsi06g01109 Csa02g00615 Chy05g00918 Cme02g01520 . . . Bda09g00945 Bpe08g00686 Bpe13g01202 Bma01g00353 Bma06g00924 Sed03g2846 Cmo05g00714 . Cma10g00418 Cma11g00415 Car10g00391 . Cpe11g00603 . Bhi06g01274 Tan08g0825 Cmetu05g0666 . Hepe08g2141 . . Cla06g01299 Cam06g1444 Cec06g1497 Cco06g1497 Clacu06g1404 Cmu06g1365 Cre06g2174 Lsi11g00747 Csa01g02115 Chy02g02191 Cme05g01392
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01557 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.4e-82 303.5
Cme02g01521 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.4e-56 217.2
Cme02g01521 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.4 3.6e-70 262.3
Cme02g01520 CCT 15 364 C2C2-CO-like Transcription Factor Family AT5G57660 51.9 6.1e-62 235.0
Cme03g01557 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.3e-53 206.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 8.1e-89 324.3
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 1.2e-87 320.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme03g01907 . 1 209 C2C2-CO-like Transcription Factor Family AT1G75540 51.7 2.0e-54 209.9
Cme01g01353 CCT,ECH 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 2.8e-48 189.5
Cme11g00162 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 54.5 3.7e-45 179.1
Cme07g01351 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 51.1 5.5e-78 288.1
Cme08g00909 . 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 81.7 3.8e-49 191.4
Cme08g00909 . 1 136 C2C2-CO-like Transcription Factor Family AT4G38960 70.3 3.6e-50 194.9
Cme01g01353 CCT,ECH 1 205 C2C2-CO-like Transcription Factor Family AT4G39070 54.0 4.4e-51 198.4
Cme03g01907 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.4 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40908 PF00643 zf-B_box 1.80E-07 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01520 Cme_Chr02 FPKM 8.145773 11.045846 8.685883 10.906754 40.920528 34.412071 38.401955 5.91155 8.460571 7.224344