Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01521 ATGGGAATTGACGGTGACAGTGTTGTAAAGGGTTTCGGCGGCGGATGGGGCGTCGTCGCTAAACCTTGCGATTCCTGCAAGACTGGCCCTGCTGCTGTCTATTGTCGACCCGACTCTGCTTTTCTCTGCCTTCCCTGCGACGCCAAAATTCATTGCGCCAACAAGCTCGCCTCTCGCCACGAGCGTGTCTGGATGTGTGAGGTCTGTGAACAAGCTCCTGCTGTGGTCATGTGCAAGGCTGATGCTGCCGCTCTCTGTGTCACTTGTGATGCCGATATTCACTCTGCTAACCCATTAGCCCGTCGCCACGAGCGTGTCCCTGTCGAGCCTTTTTTCGACTCGACGGAATCAGTTGTTAAATCCTCTTCTGTTTTCAATTTTCTGGTCCCTAATGAAACTAACGCCCCTGTTTGTGATGGTGCCCATCACCACGAGGAAGTAGAGGTTTCCTCCTGGCTTTTATCCAACTCGTTTTTCAACTCTAAGCTCGTCGACGGCCCTGAAATCAAACCCCCTAGCGGTGATCATTTGTTCTTCAACGAAATGGATTCTTTTATTGATTTTGAATACCCAAATCCAGTCAACAACCACAGCGCTATTAACGACAGCGTCGTCCCTGTTCAGACGAAGCCACTCCCTACGCCGGTTACTAACCATACCCACTCCCCGGAAAATTGCTACGACATTGACTTTTGTAGATCCAAGCTCAATTCATTCGGCTATCAGCCTCAATCCCTAAGTCACAGTGTTTCTTCTTCCTCCTTAGAAGTTGGAGTTGTTCCAGAAGGGAATTCGATGTCGGAAATATCATACCCGATGGGTCAAAACGTGAGTACCGGTGCGGATTCAGGGCTACGGTTGTCAGGACCCGGAAACCAAGCGACACAATTGTGTGGAATGGATCGAGAAGCGAGAGTGTTGAGGTACAGAGAGAAGAGGAAGAACCGGAAATTCGAGAAGACAATCCGATACGCTTCAAGAAAAGCCTATGCAGAAACCCGTCCCAGAATCAAAGGCCGGTTTGCGAAACGAACAGATATGCTATCAGAAGTTGATGAAATCTATGGCTCAGCTGCTTCATCTGTGTTCCTGACAGACGCTCAATACGGCGTTGTACCAACGTTTTGA 1128 49.38 MGIDGDSVVKGFGGGWGVVAKPCDSCKTGPAAVYCRPDSAFLCLPCDAKIHCANKLASRHERVWMCEVCEQAPAVVMCKADAAALCVTCDADIHSANPLARRHERVPVEPFFDSTESVVKSSSVFNFLVPNETNAPVCDGAHHHEEVEVSSWLLSNSFFNSKLVDGPEIKPPSGDHLFFNEMDSFIDFEYPNPVNNHSAINDSVVPVQTKPLPTPVTNHTHSPENCYDIDFCRSKLNSFGYQPQSLSHSVSSSSLEVGVVPEGNSMSEISYPMGQNVSTGADSGLRLSGPGNQATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDMLSEVDEIYGSAASSVFLTDAQYGVVPTF 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22279407 22281244 - MELO3C017500.2.1 Cme02g01521 321410

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01521 375 CDD Bbox1_BBX-like 22 65 - -
Cme02g01521 375 ProSiteProfiles Zinc finger B-box type profile. 23 65 IPR000315 GO:0008270
Cme02g01521 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 9 375 IPR045281 GO:0009909
Cme02g01521 375 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Cme02g01521 375 SMART bboxneu5 18 65 IPR000315 GO:0008270
Cme02g01521 375 SMART bboxneu5 66 108 IPR000315 GO:0008270
Cme02g01521 375 CDD Bbox1_BBX-like 66 108 - -
Cme02g01521 375 Pfam CCT motif 302 344 IPR010402 GO:0005515
Cme02g01521 375 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Cme02g01521 375 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 9 375 - -
Cme02g01521 375 ProSiteProfiles CCT domain profile. 302 344 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01521 - - - csv:101214816 721.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01521 Cme-Chr2:22279407 Cme03g01557 Cme-Chr3:24667861 1.29E-104 dispersed
Cme10g00220 Cme-Chr10:1480748 Cme02g01521 Cme-Chr2:22279407 2.06E-06 dispersed
Cme10g00258 Cme-Chr10:1689682 Cme02g01521 Cme-Chr2:22279407 2.06E-07 dispersed
Cme11g00980 Cme-Chr11:13935781 Cme02g01521 Cme-Chr2:22279407 2.13E-08 dispersed
Cme11g01597 Cme-Chr11:23782428 Cme02g01521 Cme-Chr2:22279407 2.07E-09 dispersed
Cme02g01520 Cme-Chr2:22258730 Cme02g01521 Cme-Chr2:22279407 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g01557 . 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 1.4e-82 303.5
Cme02g01521 . 20 375 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.4e-56 217.2
Cme02g01521 . 5 375 C2C2-CO-like Transcription Factor Family AT5G57660 52.4 3.6e-70 262.3
Cme02g01520 CCT 15 364 C2C2-CO-like Transcription Factor Family AT5G57660 51.9 6.1e-62 235.0
Cme03g01557 . 2 337 C2C2-CO-like Transcription Factor Family AT5G57660 50.1 2.3e-53 206.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT3G07650 54.3 8.1e-89 324.3
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT3G07650 53.8 1.2e-87 320.5
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme01g00573 . 1 407 C2C2-CO-like Transcription Factor Family AT5G48250 55.3 2.2e-86 316.2
Cme11g00980 . 1 425 C2C2-CO-like Transcription Factor Family AT5G48250 53.7 1.1e-85 313.9
Cme03g01907 . 1 209 C2C2-CO-like Transcription Factor Family AT1G75540 51.7 2.0e-54 209.9
Cme01g01353 CCT,ECH 1 207 C2C2-CO-like Transcription Factor Family AT1G75540 54.0 2.8e-48 189.5
Cme11g00162 CCT,ECH 1 171 C2C2-CO-like Transcription Factor Family AT1G75540 54.5 3.7e-45 179.1
Cme07g01351 . 1 297 C2C2-CO-like Transcription Factor Family AT1G78600 51.1 5.5e-78 288.1
Cme08g00909 . 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 81.7 3.8e-49 191.4
Cme08g00909 . 1 136 C2C2-CO-like Transcription Factor Family AT4G38960 70.3 3.6e-50 194.9
Cme01g01353 CCT,ECH 1 205 C2C2-CO-like Transcription Factor Family AT4G39070 54.0 4.4e-51 198.4
Cme03g01907 . 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.4 1.9e-46 183.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003973 3 1 1 3 2 1 2 1 1 2 1 1 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40909 PF00643 zf-B_box 6.70E-07 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01521 Cme_Chr02 FPKM 23.995419 22.866133 13.654963 11.487479 0.155909 0.250127 0.149927 19.078049 17.806808 18.26792