Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01552 ATGGCAGCCCTCCAATTTCATGGCATGGAAGCCGAAATCTCCGCAGCGTTTCTGGTAGATCGAATCATTGACCTTCATCAAAGCATCTTGAAGCTTGAAACCTTAAGGCCATGCAAGAAAGTGAACAACCTCTTCACCAACCTAGTGAACTTATGCATTTTGCCTTGTTCAATAGATGTCTCCACGTTGCCACCAAATTTACAAGCCATTCGTGAGAGCCTCATAATTCTCTGTGGCCAAGCTGAAGGCTTACTCGAGTTAGAATTCTCAACTTTGCTAAGCAAAATCCCAAAGCCTCTCAACAACCTCACTTTATTTCCATATTACCAAAACTACGTCAAATTAGCCAACCTTGAAAACAAAATTCTAAATGACAATGGAATCGTCAATCCTAAGAAGGTAGCTTTTGTGGGGTCAGGTCCTTTGCCTCTAACTTCAATTATTATGGCCATGCAACACATGAAGGGCACATATTTTGATAACTACGACGTAGACAGTGTAGCGAATGATGTAGCGAGAAAGATCGTGGGGTCGGATGCTGAGCTGGAGGGGAGAATGAAGTTTTGCTCTAGTGATATTGTTGAGGTAAAAGAAGAGCTTGGAGGATATGATTGTGTGTTTTTGGCTGCTCTCGTGGGGATGAATAAGGAAGAAAAAGTGAAGATTGTAAGGCATTTAAGGAAATATATGAAAGAAGGTGGGATTTTGTTGGTGAGAAGTGCTCAAGGAGGGAGAGCGTTTTTGTATCCTGTGGTTGAAGTTGGAGATTTGGTTGGGTTCGAGATTCTCTCTATTTTTCATCCAACTGATGATGTTGTCAATTCAGTTATCTTAGCTCGTAAGCAAACTAGTTAG 855 41.52 MAALQFHGMEAEISAAFLVDRIIDLHQSILKLETLRPCKKVNNLFTNLVNLCILPCSIDVSTLPPNLQAIRESLIILCGQAEGLLELEFSTLLSKIPKPLNNLTLFPYYQNYVKLANLENKILNDNGIVNPKKVAFVGSGPLPLTSIIMAMQHMKGTYFDNYDVDSVANDVARKIVGSDAELEGRMKFCSSDIVEVKEELGGYDCVFLAALVGMNKEEKVKIVRHLRKYMKEGGILLVRSAQGGRAFLYPVVEVGDLVGFEILSIFHPTDDVVNSVILARKQTS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22558673 22559527 - MELO3C017475.2.1 Cme02g01552 321441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01552 284 PANTHER NICOTIANAMINE SYNTHASE 1 283 - -
Cme02g01552 284 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 240 IPR029063 -
Cme02g01552 284 Pfam Nicotianamine synthase protein 15 283 IPR004298 GO:0030410|GO:0030418
Cme02g01552 284 PANTHER NICOTIANAMINE SYNTHASE 3 1 283 IPR004298 GO:0030410|GO:0030418
Cme02g01552 284 Gene3D Vaccinia Virus protein VP39 14 283 IPR029063 -
Cme02g01552 284 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 10 284 IPR004298 GO:0030410|GO:0030418
Cme02g01552 284 CDD AdoMet_MTases 163 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01552 K05953 NAS; nicotianamine synthase [EC:2.5.1.43] - csv:101209464 529.635
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01552 Cme-Chr2:22558673 Cme05g01548 Cme-Chr5:24818750 2.10E-91 dispersed
Cme02g01552 Cme-Chr2:22558673 Cme02g00033 Cme-Chr2:324312 1.07E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g1022 . . . . . . Bma07g00704 . Cmo10g00434 . . . . . Sed11g0754 . Cpe18g00614 Bhi02g00770 Tan09g1670 Cmetu02g0920 . Hepe09g0493 . . . . . . . . . . . . . Lsi06g01131 . . Cme02g01552 Blo08g00479 Blo14g00652 Bda02g00283 . Bpe08g00689 . . . . . . Cma10g00403 . Car10g00382 . . . . . . . . . . Cla06g01317 Cam06g1467 Cec06g1523 Cco06g1519 Clacu06g1426 Cmu06g1388 Cre06g2196 . Csa01g02140 Chy02g02214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT1G09240 58.2 7.4e-91 330.9
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT1G09240 58.9 1.3e-87 320.1
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT1G09240 58.5 2.2e-87 319.3
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 54.5 6.3e-74 274.6
Cme02g00033 CCT 3 274 Nicotianamine Synthase Gene Family AT1G56430 59.7 5.0e-95 344.7
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT1G56430 59.6 2.0e-91 332.8
Cme05g01549 . 3 278 Nicotianamine Synthase Gene Family AT1G56430 59.7 6.0e-88 321.2
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.1 1.2e-77 287.0
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT5G04950 56.3 1.7e-90 329.7
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT5G04950 56.9 6.9e-89 324.3
Cme05g01548 CCT 11 286 Nicotianamine Synthase Gene Family AT5G04950 57.9 1.7e-87 319.7
Cme02g00033 CCT 1 274 Nicotianamine Synthase Gene Family AT5G56080 56.5 3.4e-88 322.0
Cme05g01548 CCT 14 286 Nicotianamine Synthase Gene Family AT5G56080 57.7 5.0e-87 318.2
Cme05g01549 . 1 278 Nicotianamine Synthase Gene Family AT5G56080 56.1 1.9e-86 316.2
Cme02g01552 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 50.2 7.2e-70 261.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01552 Cme_Chr02 FPKM 3.768041 3.984213 0.0 0.0 1.486743 2.585299 1.076483 0.0 0.0 0.0