Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01576 ATGAAGAATATGACCAGACAAGAATTTGTTGCTTCGTTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGCTTCTATCTACAGAGGTGTAACTAGGCACCATCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCAGCGGAGGCCTATGATATAGCAGCCATAAAATTCCGAGGACTAAATGCGGTCACAAACTTCGACATTAGTCGTTATGACGTTAAAAGCATTGCTAGTAGCAACCTTCCCATAGGAGGGATGTCAGGCTCCAAATCCAAAACCACTTCTGATTCTGCTGCTTCCGATGGAGGCAGTCGATCGACCGACGAACGTGACGTCCACCATTCTCCTCCATCTTCAAGTACCTCAACTTTCATCTCGTCATCGTCGCAGCAAAACAATAACTCCTCTAGTACTCTAAGCTTCACAATGCCGATCAAACAAGACCCATCGGATCAATACTGGTCCATTCTCAGCTACAACCCCGAAGTCTACAATGCAAATCTCCCCAAACCCGGCGATAATAATGTTCCACCATTGTCGTCGTCGTCATCGATGTTTCAACAACCTGAATCCACAATGTTTCCCGCCATCACGGAGCTAGGATCGAGTGGGTCAGGGATGACGGAAGGCGGGATGTATGTACAACAACAGCAACAATATGTAACGCCAATGGCATTTGCAAAAGCAAGTTTTTTTCAGACACCAATTTTTGGTATGGAATGA 774 45.22 MKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGSKSKTTSDSAASDGGSRSTDERDVHHSPPSSSTSTFISSSSQQNNNSSSTLSFTMPIKQDPSDQYWSILSYNPEVYNANLPKPGDNNVPPLSSSSSMFQQPESTMFPAITELGSSGSGMTEGGMYVQQQQQYVTPMAFAKASFFQTPIFGME 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22818754 22821474 + MELO3C017457.2.1 Cme02g01576 321465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01576 257 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Cme02g01576 257 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 MobiDBLite consensus disorder prediction 99 119 - -
Cme02g01576 257 SUPERFAMILY DNA-binding domain 25 86 IPR016177 GO:0003677
Cme02g01576 257 PANTHER OS04G0653600 PROTEIN 1 199 - -
Cme02g01576 257 CDD AP2 25 86 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 MobiDBLite consensus disorder prediction 99 160 - -
Cme02g01576 257 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 MobiDBLite consensus disorder prediction 133 160 - -
Cme02g01576 257 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Cme02g01576 257 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 199 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01576 Cme-Chr2:22818754 Cme05g01005 Cme-Chr5:14308733 4.14E-13 dispersed
Cme02g01576 Cme-Chr2:22818754 Cme08g00672 Cme-Chr8:4410391 1.92E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40912 PF00847 AP2 1.20E-10 CL0081 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01576 K09285 - csv:101210453 389.423