Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01576 | ATGAAGAATATGACCAGACAAGAATTTGTTGCTTCGTTAAGAAGGAGAAGCAGTGGTTTTTCTAGAGGTGCTTCTATCTACAGAGGTGTAACTAGGCACCATCAACATGGCAGATGGCAAGCAAGAATCGGAAGGGTTGCTGGAAATAAAGATCTCTATCTTGGAACATTCAGCACACAAGAAGAAGCAGCGGAGGCCTATGATATAGCAGCCATAAAATTCCGAGGACTAAATGCGGTCACAAACTTCGACATTAGTCGTTATGACGTTAAAAGCATTGCTAGTAGCAACCTTCCCATAGGAGGGATGTCAGGCTCCAAATCCAAAACCACTTCTGATTCTGCTGCTTCCGATGGAGGCAGTCGATCGACCGACGAACGTGACGTCCACCATTCTCCTCCATCTTCAAGTACCTCAACTTTCATCTCGTCATCGTCGCAGCAAAACAATAACTCCTCTAGTACTCTAAGCTTCACAATGCCGATCAAACAAGACCCATCGGATCAATACTGGTCCATTCTCAGCTACAACCCCGAAGTCTACAATGCAAATCTCCCCAAACCCGGCGATAATAATGTTCCACCATTGTCGTCGTCGTCATCGATGTTTCAACAACCTGAATCCACAATGTTTCCCGCCATCACGGAGCTAGGATCGAGTGGGTCAGGGATGACGGAAGGCGGGATGTATGTACAACAACAGCAACAATATGTAACGCCAATGGCATTTGCAAAAGCAAGTTTTTTTCAGACACCAATTTTTGGTATGGAATGA | 774 | 45.22 | MKNMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSIASSNLPIGGMSGSKSKTTSDSAASDGGSRSTDERDVHHSPPSSSTSTFISSSSQQNNNSSSTLSFTMPIKQDPSDQYWSILSYNPEVYNANLPKPGDNNVPPLSSSSSMFQQPESTMFPAITELGSSGSGMTEGGMYVQQQQQYVTPMAFAKASFFQTPIFGME | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 22818754 | 22821474 | + | MELO3C017457.2.1 | Cme02g01576 | 321465 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01576 | 257 | Gene3D | AP2/ERF domain | 26 | 86 | IPR036955 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | PRINTS | Ethylene responsive element binding protein signature | 27 | 38 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | PRINTS | Ethylene responsive element binding protein signature | 66 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | MobiDBLite | consensus disorder prediction | 99 | 119 | - | - | |
Cme02g01576 | 257 | SUPERFAMILY | DNA-binding domain | 25 | 86 | IPR016177 | GO:0003677 | |
Cme02g01576 | 257 | PANTHER | OS04G0653600 PROTEIN | 1 | 199 | - | - | |
Cme02g01576 | 257 | CDD | AP2 | 25 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | SMART | rav1_2 | 26 | 90 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | MobiDBLite | consensus disorder prediction | 99 | 160 | - | - | |
Cme02g01576 | 257 | ProSiteProfiles | AP2/ERF domain profile. | 26 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | MobiDBLite | consensus disorder prediction | 133 | 160 | - | - | |
Cme02g01576 | 257 | Pfam | AP2 domain | 26 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cme02g01576 | 257 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 199 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01576 | Cme-Chr2:22818754 | Cme05g01005 | Cme-Chr5:14308733 | 4.14E-13 | dispersed | |
Cme02g01576 | Cme-Chr2:22818754 | Cme08g00672 | Cme-Chr8:4410391 | 1.92E-09 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40912 | PF00847 | AP2 | 1.20E-10 | CL0081 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01576 | K09285 | - | csv:101210453 | 389.423 |