Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01578 ATGCCTTCCGATTCTTCATCTGAAGGAGCTGCTCTCGAACCATTAAGATCTAGTATGATGAGTATGGAGAAGAAAAGGAATTTGGTCTATGAAATATCAGATCAGCCACATGCATCTGAATTGCTTCAGTCCTGGAGTCGACACGAGATTTTAGAAATCTTGTGTGCAGAGATGGGAAAAGAGAGGAAATATACTGGATTAACAAAACTAAAAATAATTGAGAACCTTCTGAAAATTGTTGGTAAAAAGAAATCAGGGTCAACTGAGGATGTAACAGACCTCGACAGTCAGTCTTCTCCTTGTCCTTCTCCAAAGATTTCCAAACGGCAAAGAAAAATTGATCAGCCAGCACGGCTGCCTGTTCCTGTAAACAATAGTCCAATCAGTAACACTAGGACTGACTCAAATATTGCAGTGTACTGCAGAAATTCGGCGTGCAAAGCTAACTTAAATCAAGATGATAAATTTTGCAAGAGGTGTTCATGCTGCATCTGTTATCAATATGATGATAATAAGGATCCTAGTCTGTGGTTAAGTTGCAGCTCTGACCCACCATTTCAAAGCACTTCATGTCGTATGTCATGCCATCTTGAATGTGCACTGAAGCATGAAAAATCTGGGATTTCTAGAGGACAGCAGACCGGAATTGAAGGGACCTTCTGTTGTGTATCTTGTGGAAAAGTCAATGACTTGATTGGGTGTTTGAGAAAACAATTGATGAAGGCAAAGGAAACAAGACGGGTGTATATCCTGTGTTACCGTATCTCTTTAAGCAAAAAGCTTTTGAGTGAAGGTGAAAAGTACCAAGACGTTTATCAGATTGTGGATGAGGCTGTGAAGAAACTTGAAGCTGAGGTGGGTCCTTTGGCTGGTGTACCGGTTGGTACGGGCAGAGGAATAGTGAACAGGCTTTCTTCTGGACCAGAGGTTCAGAAACTCTGCTCGTTAGCCATCGATACGCTCAGTTCCATGATACAAGATACTAATTTGGTAGCTACAAACTTCTTAAGGTTCGAAGATGTTGATGCAACATACATTACAGTGGTTGTGGGTACTGAAGATGTTTCTTGTGGAGAAACCATTGGTTACAGGCTATGGCATCGAAAGGCAGGCGAAACAGATTATCCTATCGAGCCAACTTGCACCTTGTCTCAACCAAATTTGAGGTTTGTCGTCCGAGGACTAACCCCATCTTCAGAATACTATTTCAAAGCCATTTCCTTTGATGGGACAGGCGATTTGGGGACATGTGAAGTTCAAGTCTCAACTACTATTCCTCGGGAAGATGACACAAGTTGCTTGGTGATTGAAAGAAGTCAGAGTCCTGTGACCAACTTCAGTGAGCTCTCTAATCCTTCTTCCGTAGAAGATGAAACTAACAATATAGTGCCGTGTAGTGACCAGACCGATAGTCAAACAGGGAGCTATCTTTCTTATTGCAAGGAATCTAATAAGATTATCACTATTAACCAATCTGAGGATAGAATAAACTGCACCGATGTCAGTGGAATGGGAACAGCAAAAGATTCTGTTTCGTCGTTGGATGAGGAACACGTAATAAGAAAAAGTAGCATGCTTCCTGATCCCAATGTTTCAAAACTTGAAGACAGGCATTCTTCTCAAGTCCAAATCATTGAAGGTACAACAAGCATGAATAAGGGCTCGAATTCTGCCATTCAACAAGGGACTAAATCCACACCACTTGTTAGCAGCTCCGAGGCTGGATTGCCAGTTACTCCTTGCAAAATGGAAATACTCAAGGATGTTCTCGGAAGGAGTGGCCGGTCGAAATCCTGCACCAAGGATCGAGATAATAAGGGATCTGGAGGAGAGGAACTCCGAAATGGCAGCACATCTAAGAAGAGAAATGCAGAGAGGCAAGATGTGGATTGTACTGGAAACGGTATTTCCGATAAGGATTTCGAGTATTACGTAAAGTTGATTAGATGGCTAGAATGCGAAGGACACATAGAGAAGAACTTCAGACAGAAATTCTTAACTTGGTATAGCTTGAGAGCGACAACACAAGAAGTTAGGATAGTGAAGGCCTTTGTTGATAACTTCATTGAAGATCCATCAGCTCTTGCCGAGCAACTTGTGGATACGTTTTCGGAATGCATTTCAAGCAAGAAAACATGTGCTGTGCCTTCTGGATTTTGTATGAAGCTTTGGCATTGA 2178 41.92 MPSDSSSEGAALEPLRSSMMSMEKKRNLVYEISDQPHASELLQSWSRHEILEILCAEMGKERKYTGLTKLKIIENLLKIVGKKKSGSTEDVTDLDSQSSPCPSPKISKRQRKIDQPARLPVPVNNSPISNTRTDSNIAVYCRNSACKANLNQDDKFCKRCSCCICYQYDDNKDPSLWLSCSSDPPFQSTSCRMSCHLECALKHEKSGISRGQQTGIEGTFCCVSCGKVNDLIGCLRKQLMKAKETRRVYILCYRISLSKKLLSEGEKYQDVYQIVDEAVKKLEAEVGPLAGVPVGTGRGIVNRLSSGPEVQKLCSLAIDTLSSMIQDTNLVATNFLRFEDVDATYITVVVGTEDVSCGETIGYRLWHRKAGETDYPIEPTCTLSQPNLRFVVRGLTPSSEYYFKAISFDGTGDLGTCEVQVSTTIPREDDTSCLVIERSQSPVTNFSELSNPSSVEDETNNIVPCSDQTDSQTGSYLSYCKESNKIITINQSEDRINCTDVSGMGTAKDSVSSLDEEHVIRKSSMLPDPNVSKLEDRHSSQVQIIEGTTSMNKGSNSAIQQGTKSTPLVSSSEAGLPVTPCKMEILKDVLGRSGRSKSCTKDRDNKGSGGEELRNGSTSKKRNAERQDVDCTGNGISDKDFEYYVKLIRWLECEGHIEKNFRQKFLTWYSLRATTQEVRIVKAFVDNFIEDPSALAEQLVDTFSECISSKKTCAVPSGFCMKLWH 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22841833 22847088 + MELO3C017455.2.1 Cme02g01578 321467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01578 725 MobiDBLite consensus disorder prediction 91 105 - -
Cme02g01578 725 Pfam PHD - plant homeodomain finger protein 141 259 IPR032881 -
Cme02g01578 725 MobiDBLite consensus disorder prediction 551 573 - -
Cme02g01578 725 CDD PHD_VIN3_plant 161 225 - -
Cme02g01578 725 SUPERFAMILY Fibronectin type III 337 412 IPR036116 GO:0005515
Cme02g01578 725 MobiDBLite consensus disorder prediction 594 626 - -
Cme02g01578 725 CDD FN3 336 413 IPR003961 GO:0005515
Cme02g01578 725 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 725 IPR044514 GO:0010048|GO:0040029
Cme02g01578 725 MobiDBLite consensus disorder prediction 551 575 - -
Cme02g01578 725 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 725 - -
Cme02g01578 725 MobiDBLite consensus disorder prediction 86 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01326 Cme-Chr2:19158431 Cme02g01578 Cme-Chr2:22841833 3.93E-112 dispersed
Cme02g01578 Cme-Chr2:22841833 Cme05g01963 Cme-Chr5:28182254 4.87E-12 dispersed
Cme03g01813 Cme-Chr3:26503990 Cme02g01578 Cme-Chr2:22841833 2.87E-16 transposed
Cme02g01578 Cme-Chr2:22841833 Cme05g01358 Cme-Chr5:22613711 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01578 - - csv:101220456 1409.43