Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01617 ATGGATAGTATCGGAGATGACTATTTGAATTCCTTAGGGACTGACATCTTCATAGGAGAAGAGCTCGACAGTTGGGCATTGGAAGAGCCGCTTTCTGCTTATTATGATTCGAGTTCGCCGGATGGATCGGCGGCTTCGAAGAACATTGTATCGGAAAGGAATAGAAGGAGGAAGCTTAACGAGAGGCTTTTTGCACTCCGATCGGTTGTTCCGAATATAACTAAGATGGATAAGGCTTCAATTATAAAAGATGCGATCGATTACATCCATGATTTGCATGACCAAGAGAGGAGGATTCAAGCTGAAATTTATGAGCTCGAATCGGGGACTTTGAAGAAGATAACAGGGTATGAATTCGACCAGGATCAACTTCCCTTACTGCTAAGATCGAAGAGGAAGAAAACAGAGCAATACCTCAGTTATGATTCTCCTGTTTCAAGAATTTCCCCAATTGAAGTCCTGGATCTTAGTGTAACATACATGGGAGATAGAACAATAGTAGTGAGCATGACCTGCTGCAAAAGAGCAGATTCAATGGTTAAACTCTGTGAAGTTTTTGAGTCACTCAAGCTCAAGATCATCACTGCCAATATTACTACTGTCTCTGGAAGGCTTTTGAAAACTGTCTTCATTGAGGCTGAGCAAGAGGAGAGAGATTACTTGAAGATTAAAATAGAAACAGCCATTGCAGGTCTTAATGATCCTCATAGCCCCATGAGTATTGAATCCACAAATGGAAGACACACACGAAAAGAGAGATCGGACGGCTGGAAACTAGTTCTCTCCCTGATCAGATTTTTCCATTTTGCTCTTTCTTGGGGTTGTAATGTCACATAA 837 41.58 MDSIGDDYLNSLGTDIFIGEELDSWALEEPLSAYYDSSSPDGSAASKNIVSERNRRRKLNERLFALRSVVPNITKMDKASIIKDAIDYIHDLHDQERRIQAEIYELESGTLKKITGYEFDQDQLPLLLRSKRKKTEQYLSYDSPVSRISPIEVLDLSVTYMGDRTIVVSMTCCKRADSMVKLCEVFESLKLKIITANITTVSGRLLKTVFIEAEQEERDYLKIKIETAIAGLNDPHSPMSIESTNGRHTRKERSDGWKLVLSLIRFFHFALSWGCNVT 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23325650 23329684 - MELO3C017424.2.1 Cme02g01617 321506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01617 278 SMART finulus 49 98 IPR011598 GO:0046983
Cme02g01617 278 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 41 107 IPR036638 GO:0046983
Cme02g01617 278 Gene3D - 39 108 IPR036638 GO:0046983
Cme02g01617 278 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 43 92 IPR011598 GO:0046983
Cme02g01617 278 Pfam Helix-loop-helix DNA-binding domain 50 92 IPR011598 GO:0046983
Cme02g01617 278 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 14 236 - -
Cme02g01617 278 PANTHER TRANSCRIPTION FACTOR BHLH35 14 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01617 Cme-Chr2:23325650 Cme09g00514 Cme-Chr9:4954618 1.64E-18 dispersed
Cme06g01934 Cme-Chr6:23082369 Cme02g01617 Cme-Chr2:23325650 7.08E-18 transposed
Cme08g00732 Cme-Chr8:4883076 Cme02g01617 Cme-Chr2:23325650 2.78E-09 transposed
Cme10g00294 Cme-Chr10:1921317 Cme02g01617 Cme-Chr2:23325650 7.77E-12 transposed
Cme10g00524 Cme-Chr10:3374659 Cme02g01617 Cme-Chr2:23325650 2.51E-24 transposed
Cme11g01844 Cme-Chr11:26650243 Cme02g01617 Cme-Chr2:23325650 4.49E-19 transposed
Cme12g00768 Cme-Chr12:13899354 Cme02g01617 Cme-Chr2:23325650 1.73E-07 transposed
Cme02g01617 Cme-Chr2:23325650 Cme05g01277 Cme-Chr5:20931824 1.87E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40915 PF00010 HLH 1.20E-11 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01617 - - cmo:103494233 543.502