Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01624 ATGGCGGTCGATCTCGCAGCTTTTCCGACCATCTTCGACGATCAAACCGCCATTGAAGAAGCCGCCACCGCGGGCTTACAAAGCATGAACCATCTAATCCATCTCTTGTCCAAACAACAACAACAACAACAACAATACCACTCCGAATCTCCTAATAACATCGATCTCAATTCTTCTCTTCTCACCGATTTCACCGTCTCCAAATTCAAACGATTGATTTCCCTTTTAAACCGAACCGGCCACGCTCGGTTCCGCCGTGGACCTTCCGATTCTCCTAATCCCGTTCTGAATTCCCTCGATCCACCTCAGAAAACCCATTTCTCTAAACTTAATTTCTCCCCTGTTTCGAAAATCCCTGAGTCTAGAGATTCCACTACTACCTCTTCTTTTGTGTCTACGGTCACCGGCGACGGTAGTGTTTCTAACGGTAAGCTTGATCTATCGGTCTATACTACGCCGCCTGCCAACGGCGGTAAACCGCCGTTGGCGATGAAGAGGAAGTGTAATGATGTATCTGGATTTGGTTGTAAGGTTCCTAATTCGAAGCTATGTCACTGTGCAAAGCGAAGGAAATCTGGAATGAAGAAAACTGTAAAGGTCCCGGCGATAAGTTCTAAGATCGCTGATATACCCTCCGATGAATACTCTTGGAGAAAGTACGGCCAAAAACCCATCAAAGGCTCACCTTATCCTAGAGGGTATTATAGATGTAGCACCGTGAAAGGATGTCCGGCGAGAAAGAAGGTAGAAAGAGCTCGAGACGATCCGTCGATGCTCCTCGTAACCTACGAGGGCGATCACCGTCACCCGCACCCTATGGTCGCCGACGCCAGCGTGGGTGTCGTTTCCTAA 852 48.36 MAVDLAAFPTIFDDQTAIEEAATAGLQSMNHLIHLLSKQQQQQQQYHSESPNNIDLNSSLLTDFTVSKFKRLISLLNRTGHARFRRGPSDSPNPVLNSLDPPQKTHFSKLNFSPVSKIPESRDSTTTSSFVSTVTGDGSVSNGKLDLSVYTTPPANGGKPPLAMKRKCNDVSGFGCKVPNSKLCHCAKRRKSGMKKTVKVPAISSKIADIPSDEYSWRKYGQKPIKGSPYPRGYYRCSTVKGCPARKKVERARDDPSMLLVTYEGDHRHPHPMVADASVGVVS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23403264 23404865 - MELO3C017415.2.1 Cme02g01624 321513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01624 283 Pfam WRKY DNA -binding domain 213 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01624 283 Gene3D WRKY domain 196 273 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01624 283 SMART WRKY_cls 211 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01624 283 Pfam Plant zinc cluster domain 165 209 IPR018872 -
Cme02g01624 283 MobiDBLite consensus disorder prediction 91 109 - -
Cme02g01624 283 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 12 277 - -
Cme02g01624 283 ProSiteProfiles WRKY domain profile. 206 272 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01624 283 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 12 277 IPR044810 GO:0003700
Cme02g01624 283 MobiDBLite consensus disorder prediction 83 109 - -
Cme02g01624 283 SUPERFAMILY WRKY DNA-binding domain 209 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01624 Cme-Chr2:23403264 Cme11g00698 Cme-Chr11:8243822 8.50E-65 dispersed
Cme12g01018 Cme-Chr12:17787998 Cme02g01624 Cme-Chr2:23403264 9.08E-27 dispersed
Cme02g01624 Cme-Chr2:23403264 Cme08g00590 Cme-Chr8:3758983 2.94E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40916 PF03106 WRKY 3.80E-26 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01624 - - csv:101204382 520.776