Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01633 | ATGGAAGATCATCATGAAGATGAAATTTGCAATATCAGTTGGCTTAGCCTTGGTTTGGGATTTGGTGATCAATATGTCCCAAAAAAGATTCAAAAAAACCAACATCAACAACAACAAGTCTCTTTCACTCTCATTCCTAAAGAAGAATTGGAAATTACCAACAACAACAATATGGAAATTGATGATGATGAAGTTAATTCAAGTGAAGAAGATGATGATCATCATTTGATGAAGAGGATTAGAAGCAATAATAATATTGTTAATTATGATCATCATCATCGTCAAGATTCTTCCTTCGGATCAATTAGAAGATTATCATCAGATCAATACATCAACAACAACGATATCGTTAATTCTACTAATCATAATTATAAAGGGATTAGTAGCAGTGGATCAGAATTAAGGGAGAGGAAAAAACTTAGGCTTTCTAAAGAACAATCCACTTTATTGGAAGAAAGCTTCAAACTTCACACCACATTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAACTGAAACAAACAGAAGTGGATTGTGAGTTCTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAATCGAAGGTTGAAGAAAGAATTAAATGAATTAAGATCGCTTAAACTTGGAGCTTCACAATTGTATATTCAGCTGCCTAAGGCCGCGACGCTCACTATTTGCCCTTCATGCGACCAAATTACGAGGACGCCTGCCGCCGTCACCGCGGCCGCCGTCGACGCCAATTCTCCGCCACAATAA | 816 | 37.5 | MEDHHEDEICNISWLSLGLGFGDQYVPKKIQKNQHQQQQVSFTLIPKEELEITNNNNMEIDDDEVNSSEEDDDHHLMKRIRSNNNIVNYDHHHRQDSSFGSIRRLSSDQYINNNDIVNSTNHNYKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATLTICPSCDQITRTPAAVTAAAVDANSPPQ | 271 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 23497078 | 23498830 | + | MELO3C017407.2.1 | Cme02g01633 | 321522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01633 | 271 | PANTHER | HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN | 11 | 253 | - | - | |
Cme02g01633 | 271 | SMART | halz | 193 | 236 | IPR003106 | GO:0006355|GO:0043565 | |
Cme02g01633 | 271 | Pfam | Homeobox associated leucine zipper | 193 | 226 | IPR003106 | GO:0006355|GO:0043565 | |
Cme02g01633 | 271 | ProSitePatterns | 'Homeobox' domain signature. | 168 | 191 | IPR017970 | GO:0000981|GO:0006355 | |
Cme02g01633 | 271 | Gene3D | - | 128 | 198 | - | - | |
Cme02g01633 | 271 | ProSiteProfiles | 'Homeobox' domain profile. | 133 | 193 | IPR001356 | GO:0003677 | |
Cme02g01633 | 271 | PANTHER | - | 11 | 253 | - | - | |
Cme02g01633 | 271 | SUPERFAMILY | Homeodomain-like | 122 | 194 | IPR009057 | - | |
Cme02g01633 | 271 | Coils | Coil | 192 | 229 | - | - | |
Cme02g01633 | 271 | CDD | homeodomain | 137 | 194 | IPR001356 | GO:0003677 | |
Cme02g01633 | 271 | Pfam | Homeodomain | 137 | 191 | IPR001356 | GO:0003677 | |
Cme02g01633 | 271 | SMART | HOX_1 | 135 | 197 | IPR001356 | GO:0003677 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01633 | Cme-Chr2:23497078 | Cme04g02253 | Cme-Chr4:29613050 | 2.47E-52 | dispersed | |
Cme02g01633 | Cme-Chr2:23497078 | Cme08g00681 | Cme-Chr8:4509619 | 2.10E-59 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
40917 | PF00046 | Homeodomain | 1.00E-15 | CL0123 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01633 | K09338 | - | csv:101203427 | 483.026 |