Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01633 ATGGAAGATCATCATGAAGATGAAATTTGCAATATCAGTTGGCTTAGCCTTGGTTTGGGATTTGGTGATCAATATGTCCCAAAAAAGATTCAAAAAAACCAACATCAACAACAACAAGTCTCTTTCACTCTCATTCCTAAAGAAGAATTGGAAATTACCAACAACAACAATATGGAAATTGATGATGATGAAGTTAATTCAAGTGAAGAAGATGATGATCATCATTTGATGAAGAGGATTAGAAGCAATAATAATATTGTTAATTATGATCATCATCATCGTCAAGATTCTTCCTTCGGATCAATTAGAAGATTATCATCAGATCAATACATCAACAACAACGATATCGTTAATTCTACTAATCATAATTATAAAGGGATTAGTAGCAGTGGATCAGAATTAAGGGAGAGGAAAAAACTTAGGCTTTCTAAAGAACAATCCACTTTATTGGAAGAAAGCTTCAAACTTCACACCACATTGAATCCGGCTCAGAAACAGGCACTTGCCCAACAATTAAACCTCAAAACTCGACAAGTGGAAGTTTGGTTTCAAAACAGACGTGCAAGGACGAAACTGAAACAAACAGAAGTGGATTGTGAGTTCTTGAAGAAATGTTGTGAAAGATTAAACGAAGAAAATCGAAGGTTGAAGAAAGAATTAAATGAATTAAGATCGCTTAAACTTGGAGCTTCACAATTGTATATTCAGCTGCCTAAGGCCGCGACGCTCACTATTTGCCCTTCATGCGACCAAATTACGAGGACGCCTGCCGCCGTCACCGCGGCCGCCGTCGACGCCAATTCTCCGCCACAATAA 816 37.5 MEDHHEDEICNISWLSLGLGFGDQYVPKKIQKNQHQQQQVSFTLIPKEELEITNNNNMEIDDDEVNSSEEDDDHHLMKRIRSNNNIVNYDHHHRQDSSFGSIRRLSSDQYINNNDIVNSTNHNYKGISSSGSELRERKKLRLSKEQSTLLEESFKLHTTLNPAQKQALAQQLNLKTRQVEVWFQNRRARTKLKQTEVDCEFLKKCCERLNEENRRLKKELNELRSLKLGASQLYIQLPKAATLTICPSCDQITRTPAAVTAAAVDANSPPQ 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23497078 23498830 + MELO3C017407.2.1 Cme02g01633 321522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01633 271 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 11 253 - -
Cme02g01633 271 SMART halz 193 236 IPR003106 GO:0006355|GO:0043565
Cme02g01633 271 Pfam Homeobox associated leucine zipper 193 226 IPR003106 GO:0006355|GO:0043565
Cme02g01633 271 ProSitePatterns 'Homeobox' domain signature. 168 191 IPR017970 GO:0000981|GO:0006355
Cme02g01633 271 Gene3D - 128 198 - -
Cme02g01633 271 ProSiteProfiles 'Homeobox' domain profile. 133 193 IPR001356 GO:0003677
Cme02g01633 271 PANTHER - 11 253 - -
Cme02g01633 271 SUPERFAMILY Homeodomain-like 122 194 IPR009057 -
Cme02g01633 271 Coils Coil 192 229 - -
Cme02g01633 271 CDD homeodomain 137 194 IPR001356 GO:0003677
Cme02g01633 271 Pfam Homeodomain 137 191 IPR001356 GO:0003677
Cme02g01633 271 SMART HOX_1 135 197 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01633 Cme-Chr2:23497078 Cme04g02253 Cme-Chr4:29613050 2.47E-52 dispersed
Cme02g01633 Cme-Chr2:23497078 Cme08g00681 Cme-Chr8:4509619 2.10E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40917 PF00046 Homeodomain 1.00E-15 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01633 K09338 - csv:101203427 483.026