Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01678 ATGGTAATAATCAGATTTGAAATTGAAGGACATGTGACTGGGTTTGGTCATCCAGACTGGACAAAAACACATGATGCAGCTTCTCGTACATCTCCAATAGTTTCTGCTCTGGTCGAAGGAGGAGCTACTTGCATTGGAAAAACTGTTATCAATGAATTGTCAATGGGCATCAGTGGAGAAAACAAGCATTATGGCACGCCCACAAATCCTGCATCACATTCCAGAGTTCCTGGTGGGTCATCCAGTGGAGCTGCTGTTGCCGTAGCTGCTAATCTTGTTGATTTCTCTTTGGGTATTGATACTGTTGGTGACGTGAGAATACCTGCTAGCTTTTGTGGCATTTTAGGGTTTCGACCTTCACATGGATCTGTTTCCCAAGTTGGAATTGTACCTGTTTCGTTAAGTCTTGACACTGTTGGAATGTTTGCCAAGGATCCTAATGTCTTGCGTCGCGTTGGCCACGTGCTTTTGCAACTTCCATATGCGGTTCAACGCAATCCTAGACAAGTTATTATAGCTGATGATTGCTTTCAACTACTGAAGATACCTGTTGACAGGATTACTCAGGCGGTGACCAAATGTACTGAGAAACTTTTTGGCAGACAAGCATTGAAGCACGAAAATCTTGGAAGCTATTTGAGTTCTAAAGTTCCAAAATTGAAAGAGTTAGTTGGGAAAAGGACAAATGGGAATCTGGATTCTGCTTCAATTAGAGTGATGGCCAATCTGATCCAGACAGTTGAAAGGATTGAATTCAAAGGCAATCATGGGGAATGGATTGACTCGGTGAAACCAGATTTGGATCCTGCTCTAACGGAGCAATTAAATGAGAAGTTGGAGATACCAGATGCAATGATTGAAAACTTCAAGTCTGTTAGAAATGAAACCCGTATGGCTATTAATTCTCTTTTGAAGGATGATGGAGTTCTAGTCATCCCCACCACTGTAGATCCTCCTCCAAAGCTAGGTGGAAAGGAGATTTTTTCAGAAGAGTACCAGACTCGTGTATTTAGTTCTTTAAGCATTGCTAGCATATCGGGTTGCTGTCAGGTCACCTTACCACTGGGATTTCATGATAGTTGTCCTGTATCTGTGTCCTTGTTAGCCAGGCATGGGGGAGATCGATTCTTGCTCGATATTGTGCAGACCATGTACAAGTCTTTGCAAGAGGAGGCTGAGGCTGCTTCCAAATCCAAATTCTCAAAGAATGCTGTTAGCCAAGAACAGTCGGCTGAGATTGCAAAAGAAAAGGGTAATCAAGCATACAAAGAAAAACAGTGGGAGAGGGCTATTGCTTGTTATACCGAAGCCATCAAACTCAACAGCAGAAATGCTACTTATTACAGTAATAGGGCTGCAGCATATTTAGAGCTTTCACGGTTTCACCAAGCAGAGGCAGATTGCAGTAAGGCTATTGACCTGGATAAGAAGAATGTTAAATCGTATTTACGAAGGGGTACAGCGAGAGAGATGCTTGGTTTTTTCAAGGAAGCAATTGAAGATTTTAGTCATGCCCTTGTTCTTGAACCAACAAACAAAAGAGCATCAATATCTGCAGAGAGATTAAGAAAGCTATTCACAAGTTGA 1587 42.09 MVIIRFEIEGHVTGFGHPDWTKTHDAASRTSPIVSALVEGGATCIGKTVINELSMGISGENKHYGTPTNPASHSRVPGGSSSGAAVAVAANLVDFSLGIDTVGDVRIPASFCGILGFRPSHGSVSQVGIVPVSLSLDTVGMFAKDPNVLRRVGHVLLQLPYAVQRNPRQVIIADDCFQLLKIPVDRITQAVTKCTEKLFGRQALKHENLGSYLSSKVPKLKELVGKRTNGNLDSASIRVMANLIQTVERIEFKGNHGEWIDSVKPDLDPALTEQLNEKLEIPDAMIENFKSVRNETRMAINSLLKDDGVLVIPTTVDPPPKLGGKEIFSEEYQTRVFSSLSIASISGCCQVTLPLGFHDSCPVSVSLLARHGGDRFLLDIVQTMYKSLQEEAEAASKSKFSKNAVSQEQSAEIAKEKGNQAYKEKQWERAIACYTEAIKLNSRNATYYSNRAAAYLELSRFHQAEADCSKAIDLDKKNVKSYLRRGTAREMLGFFKEAIEDFSHALVLEPTNKRASISAERLRKLFTS 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23917126 23927822 + MELO3C017360.2.1 Cme02g01678 321567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01678 528 SMART tpr_5 479 512 IPR019734 GO:0005515
Cme02g01678 528 SMART tpr_5 411 444 IPR019734 GO:0005515
Cme02g01678 528 SMART tpr_5 445 478 IPR019734 GO:0005515
Cme02g01678 528 Gene3D Amidase signature (AS) domain 4 388 IPR036928 -
Cme02g01678 528 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Cme02g01678 528 ProSiteProfiles TPR repeat profile. 445 478 IPR019734 GO:0005515
Cme02g01678 528 Coils Coil 378 398 - -
Cme02g01678 528 PANTHER OUTER ENVELOPE PROTEIN 64, CHLOROPLASTIC 6 527 - -
Cme02g01678 528 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Cme02g01678 528 SUPERFAMILY TPR-like 408 515 IPR011990 GO:0005515
Cme02g01678 528 Gene3D Tetratricopeptide repeat domain 394 510 IPR011990 GO:0005515
Cme02g01678 528 SUPERFAMILY Amidase signature (AS) enzymes 6 382 IPR036928 -
Cme02g01678 528 Pfam TPR repeat 418 458 - -
Cme02g01678 528 PANTHER AMIDASE 1 6 527 - -
Cme02g01678 528 Pfam Amidase 7 155 IPR023631 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01678 - - - csv:101221204 971.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00235 Cme-Chr1:1683889 Cme02g01678 Cme-Chr2:23917126 0 dispersed
Cme02g00102 Cme-Chr2:770422 Cme02g01678 Cme-Chr2:23917126 5.51E-124 dispersed
Cme02g00103 Cme-Chr2:776772 Cme02g01678 Cme-Chr2:23917126 8.07E-113 dispersed
Cme02g01678 Cme-Chr2:23917126 Cme08g01828 Cme-Chr8:21643489 5.20E-24 dispersed
Cme05g01542 Cme-Chr5:24777057 Cme02g01678 Cme-Chr2:23917126 1.36E-12 dispersed
Cme06g00757 Cme-Chr6:4989151 Cme02g01678 Cme-Chr2:23917126 5.41E-09 dispersed
Cme02g01678 Cme-Chr2:23917126 Cme05g00304 Cme-Chr5:2265394 1.03E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g204 Blo04g00853 Blo16g00111 . . . Bpe13g00379 Bma06g00068 . . . Cma10g00330 Cma11g00315 Car10g00312 Car11g00290 . . Cpe04g01367 Bhi02g00148 Tan09g1815 . . Hepe09g0395 . . Cla06g01417 Cam06g1570 Cec06g1630 Cco06g1622 Clacu06g1532 Cmu06g1486 Cre06g2295 . . . Cone19ag0334 . . . . Blo13g00181 . . . . Bpe15g00544 . . . Cmo10g00356 Cmo11g00320 . . . . . . . . . . . . . . . . . . . . Lsi06g01280 Csa01g00438 Chy02g02307 Cme02g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004673 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 2 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01678 Cme_Chr02 FPKM 8.677389 8.987587 9.129253 12.841979 20.997335 21.978981 18.787373 7.380258 5.352494 5.529162