Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01686 ATGTGGACGTTAGGTTATGATGACAATGGCGGAGAATTTTGCTTCTCAGAGGCCGCCTTCTTTCATGCCGCTCGTAAGCTTCGACCTCTCCTCCCTCGCCCATTGCTATCCCTTCGTGCCAACGGTCCTCCTAACTTCTCTTCTCAATATCACCACATCGGTAATGTTTTGGATGAGGAAAGGAAGAGAGAGTACTTGTTGAATAATGAAAAGAGTTCATCGTCATCATCAACGTCAAGTACTACTCCAACAATACCAATAGTAGTGAGCTCATCGAGATGGAATCCAACGGTGGAGCAGTTGAGAATTCTGGAGGAGCTTTACCGGCGGGGGACAAGAACGCCCTCCGCCGATCAAATCCAACACATCACCGCCCAGCTCCGCCGCTTTGGCAAAATAGAAGGCAAAAATGTGTTTTATTGGTTTCAAAATCACAAGGCTAGAGAACGCCAAAAACGACGCCGTCAAACTGCCGCCGATCAAACCAAATATTCCGGTAAAAACATTTTCATGTATTAA 519 46.44 MWTLGYDDNGGEFCFSEAAFFHAARKLRPLLPRPLLSLRANGPPNFSSQYHHIGNVLDEERKREYLLNNEKSSSSSSTSSTTPTIPIVVSSSRWNPTVEQLRILEELYRRGTRTPSADQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQTAADQTKYSGKNIFMY 172
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 23977221 23977965 - MELO3C017355.2.1 Cme02g01686 321575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01686 172 SUPERFAMILY Homeodomain-like 91 156 IPR009057 -
Cme02g01686 172 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 46 161 - -
Cme02g01686 172 CDD homeodomain 93 153 IPR001356 GO:0003677
Cme02g01686 172 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 46 161 IPR044555 GO:0003700|GO:0099402
Cme02g01686 172 Gene3D - 91 159 - -
Cme02g01686 172 SMART HOX_1 89 156 IPR001356 GO:0003677
Cme02g01686 172 Pfam Homeodomain 91 151 IPR001356 GO:0003677
Cme02g01686 172 ProSiteProfiles 'Homeobox' domain profile. 97 152 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01686 Cme12g01833 CCT
Cme02g01686 Cme12g01833 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01686 Cme-Chr2:23977221 Cme11g01740 Cme-Chr11:25576465 2.62E-29 dispersed
Cme03g02065 Cme-Chr3:28133933 Cme02g01686 Cme-Chr2:23977221 1.44E-29 transposed
Cme06g02340 Cme-Chr6:30764996 Cme02g01686 Cme-Chr2:23977221 2.61E-14 transposed
Cme08g00921 Cme-Chr8:6062201 Cme02g01686 Cme-Chr2:23977221 3.87E-11 transposed
Cme12g01833 Cme-Chr12:24715249 Cme02g01686 Cme-Chr2:23977221 2.13E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40918 PF00046 Homeodomain 1.70E-19 CL0123 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01686 - - cmo:103494337 305.834