Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01692 ATGCAAGCGCGCGGGAACTGCCGTTTCAGCCTGTTTATTGGCAGCTCTTCACGATCGATTCAAACTGAATCCATCACCAATAAGCTTCGCGCTTCTTCAAATTCTTCTCCGTCGAAGAAAACATGGACCCAAAAACTCGAATCCAAAAACACTGACCCCACAATTGTTGATTCCGATATAGTCAAATGGAACAGGAAAATCAGCGCCTACATGCGCAAAGGTCAATGCGAGTCCGCTCTAAGCGTTTTCAATGGTTATGCTCAGAATGGGCTGCTTTCAGAAGCTCGGAGATTATTTGAAGAGTTACCAATTCGAGATGTGTTTGCTTGGACGGCCATGGTTTCTGGTTTTGTGCAGAATGGGATGTTGGATGAAGCAACGAGAATTTTTGAAGAAATGCCTGAGAAGAATGAAGTTTCGTGGAATGCAATGATTGCAGGGTATGTCCAGAGCCAGCAAATAGAAAAAGCAAGGGAATTATTTGATCAAATGCCTTCCCGGAATATCAGTTCTTGGAATACAATGGTAACTGGGTATGCTCAGTGTGGCAATATTGATCAAGCCAAGATTTTGTTTGATGAGATGCCTCAACGTGATTGTATATCATGGGCGGCAATGATTTCTGGCTATGCCCAAAGCGGCCAGAGTGAAGAGGCTTTGCACCTTTTTATTGAGATGAAAAGAGATGGGGGAATCTTGAATAGATCTGCATTAGTAGGTGCTTTGAGCTCGTGTGCAGAGATTGCTGCTTTGGAGTTAGGGAAGCAACTACATGGACGACTAGTTAAGGCAGGATTCGAAACTGGGTATTATGCTGGAAATGCACTTCTAGCCATGTATTGCAAATGCGGAAGTATAGAAGAGGCATTTGATGTATTTGAAGATATAACAGAGAAGGATATTGTCTCCTGGAACACAATGATCGCAGGTTATGCAAGGCATGGGTTTGGTAAAGAGGCTTTAGCTCTTTTCGAGTCAATGAAGATGACAATCAAACCTGATGATGTCACACTGGTCGGTGTTCTATCTGCATGCAGCCATACTGGCTTGGTAGATAAAGGCATGGAATATTTTAACTCAATGTATCAGAACTACGGCATAACAGCAAATTCCAAACATTACACTTGCATGATTGATCTACTTGGTCGTGCGGGTCGGCTAGATGAGGCTCTGAATTTAATGAAGAGCATGCCATTTCACCCAGACGCAGCAACTTGGGGTGCTTTACTCGGAGCTAGCCGAATTCATGGTGACACAGAATTAGGTGAGAAGGCTGCTGAGAAGGTATTTGAGATGGAGCCTGATAATTCAGGGATGTACGTTCTTCTCTCAAATCTATACGCAGCTTCAGGGAGATGGAGGGAAGTTCGTGAGATGAGATTGAAAATGAGAGACAAAGGAGTGAAGAAAGTTCCTGGATATAGTTGGGTTGAAATACAAAACAAGACTCACATCTTCACTGTTGGAGATTGTTCACATCCAGAAGCAGAGAGGATATATGCTTATTTAGAAGAGTTGGATCTAGAATTGAAGAAGGAGGGATTTGTTTCTTCTACTAAATTGGTGTTACATGACGTGGAAGAGGAGGAGAAGGAACACATGCTCAAGTATCATAGTGAAAAATTAGCAGTTGCATTTGGGATTTTATCTATACCACCTGGGAGACCAATCCGAGTGATTAAAAACTTGAGGAACCATGGGAAGCTGAAGCTGGCCCAATAA 1722 42.86 MQARGNCRFSLFIGSSSRSIQTESITNKLRASSNSSPSKKTWTQKLESKNTDPTIVDSDIVKWNRKISAYMRKGQCESALSVFNGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNISSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIEMKRDGGILNRSALVGALSSCAEIAALELGKQLHGRLVKAGFETGYYAGNALLAMYCKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANSKHYTCMIDLLGRAGRLDEALNLMKSMPFHPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRLKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKEGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRNHGKLKLAQ 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24019248 24023485 - MELO3C029742.2.1 Cme02g01692 321581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01692 573 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 84 564 - -
Cme02g01692 573 Pfam PPR repeat 171 200 IPR002885 -
Cme02g01692 573 Pfam PPR repeat 81 102 IPR002885 -
Cme02g01692 573 Pfam PPR repeat 201 230 IPR002885 -
Cme02g01692 573 Pfam PPR repeat 106 133 IPR002885 -
Cme02g01692 573 Pfam PPR repeat 366 397 IPR002885 -
Cme02g01692 573 Pfam DYW family of nucleic acid deaminases 514 564 IPR032867 GO:0008270
Cme02g01692 573 Gene3D Tetratricopeptide repeat domain 80 167 IPR011990 GO:0005515
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 400 IPR002885 -
Cme02g01692 573 SUPERFAMILY TPR-like 151 459 IPR011990 GO:0005515
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Cme02g01692 573 Pfam E+ motif 483 506 IPR046849 -
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 109 137 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 139 170 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 302 328 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 374 397 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 171 200 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 274 302 IPR002885 -
Cme02g01692 573 TIGRFAM PPR: pentatricopeptide repeat domain 201 230 IPR002885 -
Cme02g01692 573 Pfam E motif 416 478 IPR046848 -
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 136 IPR002885 -
Cme02g01692 573 MobiDBLite consensus disorder prediction 24 47 - -
Cme02g01692 573 Pfam PPR repeat family 136 170 IPR002885 -
Cme02g01692 573 Pfam PPR repeat family 299 346 IPR002885 -
Cme02g01692 573 PANTHER OS07G0578800 PROTEIN-RELATED 84 564 IPR045215 GO:0003723|GO:0009451
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 330 IPR002885 -
Cme02g01692 573 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 137 171 IPR002885 -
Cme02g01692 573 Gene3D Tetratricopeptide repeat domain 328 495 IPR011990 GO:0005515
Cme02g01692 573 Gene3D Tetratricopeptide repeat domain 168 254 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01692 - - - csv:101211575 944.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01692 Cme-Chr2:24019248 Cme08g01464 Cme-Chr8:13381212 5.15E-19 dispersed
Cme04g02089 Cme-Chr4:28265591 Cme02g01692 Cme-Chr2:24019248 8.01E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g225 . . . . . . . . . . . . . Car11g00280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01692
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008820 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 0 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01692 Cme_Chr02 FPKM 6.680912 8.329021 0.680092 0.53274 1.053104 1.073079 1.009808 1.047964 1.528315 1.841137