Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01693 ATGCAAATGGCTGGAGGTGATCAAGCTGATATGGCAGTTCACTCTCTTGGATCTAAACTTTCTTTGATTTCAGAACATGAACCTGAAAAATGTGGCAGTAATAATAATGTCACCAATAATCACCAACAAAGACCTTGCTTTGATCCTTCTCTTGTTTCTCCCAAGGTCGTACCACCTATCTCGGTGGCGGCGGAGAGTGATCAAGCTCTTCGTCGACCTCGAGGGCGGCCTGCTGGGTCCAAAAACAAGCCTAAACCACCCATTATTGTTACCCGAGATAGCGCTAATGCGCTACGAGCTCATGCCATTGAGGTTAGCTCTGGGTGTGATGTCAATGAGAGCCTCTCCAACTTTGCTCGGAGGAAGCAGCGTGGCGTCTGCATTCTTAGCGGTAGCGGATGTGTCACTAATGTCACGCTTCGCCAAGCTGCTTCCTCTGGCGCCATTGTCACTCTACATGGCCGCTTTGAGATTCTTTCGATGTTGGGTTCGATCTTACCACCACCAGCACCGTCGGGAATCACTGGGCTGACAATTTACTTGTCCGGCGCACAAGGGCAGGTGGTCGGTGGCGTCGTAGTGGGAGCGCTCATTGCTTCCGGTCCAGTTGTGATCATGGCAGCAACGTTCATGAACGCGACATTCGACCGTCTGCCATCTGACGACGAAGAAGTGGCGGCCACCATGCAGAGTCAACATTACGGCCAAAATGGGCGGAGCCACCACCACCTGGATGTTTCAGATCTGTATGGAGTGCCACAAAATTTGATCACCAACAGCAGTCTTCCACCGGAATTATACACCTGGGCGACGGCTGGGAGAACCATGTCAAAGACTTAA 840 51.31 MQMAGGDQADMAVHSLGSKLSLISEHEPEKCGSNNNVTNNHQQRPCFDPSLVSPKVVPPISVAAESDQALRRPRGRPAGSKNKPKPPIIVTRDSANALRAHAIEVSSGCDVNESLSNFARRKQRGVCILSGSGCVTNVTLRQAASSGAIVTLHGRFEILSMLGSILPPPAPSGITGLTIYLSGAQGQVVGGVVVGALIASGPVVIMAATFMNATFDRLPSDDEEVAATMQSQHYGQNGRSHHHLDVSDLYGVPQNLITNSSLPPELYTWATAGRTMSKT 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24024980 24026481 + MELO3C017349.2.1 Cme02g01693 321582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01693 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 226 - -
Cme02g01693 279 MobiDBLite consensus disorder prediction 27 50 - -
Cme02g01693 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 16 48 278 - -
Cme02g01693 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 48 278 IPR014476 GO:0003680
Cme02g01693 279 MobiDBLite consensus disorder prediction 62 88 - -
Cme02g01693 279 CDD DUF296 99 182 IPR005175 -
Cme02g01693 279 ProSiteProfiles PPC domain profile profile. 95 232 IPR005175 -
Cme02g01693 279 Gene3D - 98 234 - -
Cme02g01693 279 MobiDBLite consensus disorder prediction 28 47 - -
Cme02g01693 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 211 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01906 Cme-Chr1:27461013 Cme02g01693 Cme-Chr2:24024980 2.10E-47 dispersed
Cme02g01693 Cme-Chr2:24024980 Cme10g00915 Cme-Chr10:6686355 3.13E-67 dispersed
Cme02g01693 Cme-Chr2:24024980 Cme11g02481 Cme-Chr11:31446850 8.43E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01693 - - csv:101219306 533.487