Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01695 ACCGGCAATTGTGTAAGAAAGTCCTCCTTTCATCACCGTTATCGTCGTCTTCGTGGGCTTCACGGTCACAGTTCCAAATGCAAACTCCTTCAAATTGACTCTCCATTTCCCCATTTTCTTTACTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTCTCCGACCATGGCGACGCCGGAGCTTTCTGAAACTTACGCTTGTGTGCCATCCACCGAGCGAGGCCGAGGAATTTTGATCTCCGGTCACCCTAAAACCAACTCCATTCTTTATACCAATGGCCGATCTGTCATGATCCTTAATCTCGACAACCCTCTCGAGGTCTCTGTCTATGCCGAGCACGGTTATCCGGCTACGGTTGCCAGGTACTCGCCGAATGGTGAGTGGATCGCGTCTGCTGACGTGTCTGGGACTGTTAGGATTTGGGGCACTCATAGTGGGTTTGTGCTCAAGAAGGAGTTTAAGGTTTTGTCTGGGCGGATCGATGATTTGCAATGGTCTCCTGATGGAATGAGGATTGTGGCTTGTGGTGAAGGGAAAGGGAAATCGTTCGTGCGTGCTTTTATGTGGGATTCGGGTACGAACGTTGGCGAGTTTGATGGTCATTCTAGGCGGGTTTTAAGTTGTGCATTTAAACCAACAAGACCCTTTCGCATTGCCACCTGCGGAGAGGATTTCCTAGTGAATTTTTATGAAGGACCACCATTTAGATTTAAGCTATCTCTCAGGGACCATTCAAATTTTGTCAACTGTCTAAGGTTCTCTCCAGATGGCAGCAAGTTCATTACTGTAAGCTCCGACAAGAAGGGAATAATATATGATGCGAAGACTGGGGATAAGATGGGAGAACTCTCTTCCGATGATGGGCATAAAGGCAGTATTTATGCTGTCAGCTGGAGTTCGGATGGCAAACGGGTGCTGACTGTCTCTGCTGACAAGACAGCAAAAGTCTGGGAGATATCTGATGCAGGTAATGGGAAGTTAGAGAAAACCTTGACTTCTCATGGCACAGGTGGAGTTGATGATATGTTGGTTGGGTGTTTATGGCAGAATCAACATCTTGTCACAGTTTCTCTTGGTGGAACTATTAGTTTGTTTTCAGCTAGTGATCTTGATAAGTCCCCCGTCATCTTATCTGGACATATGAAGAATGTCACTTCATTAGTTGTTCTAAAAAGTGACCCTAAAGTTATATTATCCACTAGCTACGATGGGGTGATTATTAAATGGATTCAAGGCATTGGATACAGTGGCAAGTTGCAAAGAAGAGAAAATTCTCAAATCAAATGTTTTGCTGCTCTTGAAGATGAACTTGTTACTTCCGGTTTTGACAATAAGGTATGGAGAGTTTCTATCAAGGACGGTCAATGTGGGGAGGCAGAGGCTATTGATGTTGGAAGTCAACCAAAGGACTTGACTCTTGCTGCTCTTTCTCCTGAACTTGCTTTAGTTTCAATTGATTCGGGAGTCGTCTTACTGCGTGGCTCAAGCATAGTGTCAACCATCAACCTTGGTTTTACCGTGACAGCATCTGTACTTGCACCTGATGGAAGTGAGGCTATCATAGGTGGACAAGATGGTAAGTTACATATTTATTCCATCAATGGCGACTCGCTCACTGAAGAAGTAACCCTTGAGAAACATAGAGGAGCTATTAGTGTGATACGCTACTCCCCAGATCTTTCAATGTTTGCATCAGGAGATCTCAACCGAGAAGCTGTCGTCTGGGATCGTGCATCTCGAGAGGTTAAACTTAAGAATATGTTGTATCATACTGCTCGGATAAATTGCCTCGCCTGGTCTCCCGATAACACTAAGGTTGCGACTGGTTCATTAGATACATGTGTCATCATATATGAAATTGACAAGCCAGCATCGAACCGTCTAACAATAAAGGGAGCTCATTTGGGTGGGGTGTACGGACTGGCCTTCACAGATGACTTTAGTGTTGTAAGCTCCGGTGAGGATGCTTGTGTTCGTGTTTGGAAGTTGGTTCCTCAGTGA 1998 44.94 TGNCVRKSSFHHRYRRLRGLHGHSSKCKLLQIDSPFPHFLYFLFFFFFFFFSPTMATPELSETYACVPSTERGRGILISGHPKTNSILYTNGRSVMILNLDNPLEVSVYAEHGYPATVARYSPNGEWIASADVSGTVRIWGTHSGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSIYAVSWSSDGKRVLTVSADKTAKVWEISDAGNGKLEKTLTSHGTGGVDDMLVGCLWQNQHLVTVSLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKWIQGIGYSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLAALSPELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSINGDSLTEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTIKGAHLGGVYGLAFTDDFSVVSSGEDACVRVWKLVPQ 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24037350 24042817 + MELO3C017347.2.1 Cme02g01695 321584

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 319 IPR001680 GO:0005515
Cme02g01695 665 PANTHER ACTIN-INTERACTING PROTEIN 1-1 59 665 - -
Cme02g01695 665 Gene3D - 67 393 IPR015943 GO:0005515
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 543 575 - -
Cme02g01695 665 CDD WD40 105 408 - -
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 586 627 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 580 618 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 275 317 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 145 189 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 102 141 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 190 230 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 493 531 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 233 272 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 323 365 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 369 409 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 536 575 IPR001680 GO:0005515
Cme02g01695 665 SMART WD40_4 622 661 IPR001680 GO:0005515
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 319 - -
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 630 665 IPR001680 GO:0005515
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 543 575 IPR001680 GO:0005515
Cme02g01695 665 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 92 623 IPR011047 -
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 630 665 - -
Cme02g01695 665 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 59 665 - -
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 150 IPR001680 GO:0005515
Cme02g01695 665 Pfam WD domain, G-beta repeat 119 140 IPR001680 GO:0005515
Cme02g01695 665 Pfam WD domain, G-beta repeat 239 267 IPR001680 GO:0005515
Cme02g01695 665 Pfam WD domain, G-beta repeat 631 661 IPR001680 GO:0005515
Cme02g01695 665 Pfam WD domain, G-beta repeat 286 316 IPR001680 GO:0005515
Cme02g01695 665 Pfam WD domain, G-beta repeat 589 617 IPR001680 GO:0005515
Cme02g01695 665 SUPERFAMILY WD40 repeat-like 350 535 IPR036322 GO:0005515
Cme02g01695 665 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Cme02g01695 665 ProSiteProfiles Trp-Asp (WD) repeats profile. 240 281 IPR001680 GO:0005515
Cme02g01695 665 Gene3D - 63 661 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01695 K24736 WDR1, AIP1; WD repeat-containing protein 1 (actin-interacting protein 1) - csv:101218837 1216.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01695 Cme-Chr2:24037350 Cme04g01625 Cme-Chr4:23522485 7.81E-07 dispersed
Cme02g01695 Cme-Chr2:24037350 Cme04g01088 Cme-Chr4:14883722 5.61E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g232 . Blo16g00117 . . . Bpe13g00373 Bma06g00062 . . . Cma10g00323 Cma11g00303 Car10g00303 Car11g00277 Sed08g0392 . Cpe04g01380 Bhi02g00125 Tan09g1839 Cmetu02g0822 . Hepe09g0377 . . Cla06g01431 Cam06g1585 Cec06g1645 Cco06g1637 Clacu06g1546 Cmu06g1501 Cre06g2310 Cone2ag0753 . . . . . . . . . Bda11g01783 . . . . . . Cmo10g00346 Cmo11g00306 . . . . . . . . . . . . . . . . . . . . Lsi06g01298 Csa01g00422 Chy02g02322 Cme02g01695
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006924 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01695 Cme_Chr02 FPKM 1.953766 2.794748 0.335262 0.317237 5.677848 5.733218 5.866909 0.663831 0.890109 0.901984