Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01701 ATGGCTGACCTCGATCCATCAAAGAAAGTGGCTGATAGATATTTAAAGCGTGAGGTTCTTGGAGAGGGTACCTATGGTGTTGTATATAAAGCCATTGATACTCAGACAGGTCAGACGGTTGCAATCAAGAAAATTCGGCTTGGGAAACAAAAAGAGGGAGTAAATTTTACGGCTCTTCGAGAAATCAAGCTGCTTAAAGAGCTAAAAGATTCAAATATAATTGAGTTAATTGATGCATTCCCTCACAAAGGGAATTTGCATCTTGTATTTGAATTTATGGAGACAGACCTTGAGGCTGTTATACGTGATCGAAACATATTTCTTTCCCCAGCTGACATCAAATCATACCTTCAGATGACGTTGAAAGGCCTTGCATATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAGCCAAATAATTTGTTGATAGGATCAAATGGTCAACTGAAACTTGCAGATTTTGGTTTGGCTCGGATATTTGGGAGTCCGGATCGTAGATTTACTCACCAGGTGTTTGCTCGATGGTACAGAGCACCTGAGCTATTGTTTGGTACTAAGCAATATGGTTCTGCAGTGGATGTTTGGGCAGCAGCTTGTATTTTTGCTGAACTACTACTTCGTCGACCTTTTCTTCAGGGTTCAAGTGACATTGATCAATTAGGGAAGATTTTTGCAGCGTTTGGAACGCCTACGCCTTCACAATGGCCTGATATGTTATACCTACCTGATTACGTTGAGTTCCAATATGTCCCTGCACCTCCTCTAAGATCATTGTTTCCTATGGCTAGTGATGACACGCTGGATCTCCTATCAAAGATGTTTGCCTATGATCCAAAATCTAGAATTACTATTCAACAAGCATTGGAGCATAGGTACTTCACATCTGCACCACTTCCCACAGATCCTAGTAAGCTTCCAAGGCCTACTTCAAAGCGCGAACCTACAAACACGAACTCTCGAGTTTTGGATTTAAATTCAAATGACGGTCCTACTGTACTTTCACCTCCAAGAAAGTCAAGAAGAGTAATGCCAGATCGTGAGGCTTTTGAAGGCAATGCATATAGAGCTGATAGGCTTGATGACCATGTTAATGAGGTGCGAGAGTTAGCTGCTGGAAATACGAGCAAGAATGAAGCAGTGCCTATGTCGTTAGATTTTTCTGTATTTGGTGGGAAACCTCCAAATAGACCTACAATTAACAGTGCTGACCGATCACATCTTAAAAGGAAATTAGATCTTGAATTCCAGCAATAA 1257 41.13 MADLDPSKKVADRYLKREVLGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKLLKELKDSNIIELIDAFPHKGNLHLVFEFMETDLEAVIRDRNIFLSPADIKSYLQMTLKGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKQYGSAVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMLYLPDYVEFQYVPAPPLRSLFPMASDDTLDLLSKMFAYDPKSRITIQQALEHRYFTSAPLPTDPSKLPRPTSKREPTNTNSRVLDLNSNDGPTVLSPPRKSRRVMPDREAFEGNAYRADRLDDHVNEVRELAAGNTSKNEAVPMSLDFSVFGGKPPNRPTINSADRSHLKRKLDLEFQQ 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24087177 24092608 - MELO3C017342.2.1 Cme02g01701 321590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01701 418 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Cme02g01701 418 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01701 418 MobiDBLite consensus disorder prediction 378 407 - -
Cme02g01701 418 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01701 418 PANTHER CELL DIVISION PROTEIN KINASE 9 362 - -
Cme02g01701 418 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Cme02g01701 418 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01701 418 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Cme02g01701 418 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Cme02g01701 418 MobiDBLite consensus disorder prediction 296 343 - -
Cme02g01701 418 Gene3D Phosphorylase Kinase; domain 1 10 94 - -
Cme02g01701 418 SUPERFAMILY Protein kinase-like (PK-like) 10 301 IPR011009 -
Cme02g01701 418 PANTHER CYCLIN-DEPENDENT KINASE D-2 9 362 - -
Cme02g01701 418 MobiDBLite consensus disorder prediction 310 334 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01701 Cme-Chr2:24087177 Cme10g00140 Cme-Chr10:1009312 7.78E-91 dispersed
Cme05g01984 Cme-Chr5:28364071 Cme02g01701 Cme-Chr2:24087177 5.60E-33 dispersed
Cme02g01701 Cme-Chr2:24087177 Cme10g00639 Cme-Chr10:4065775 3.46E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64703 PF00069 Pkinase 1.80E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01701 K02202 - csv:101217645 840.876