Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01727 ATGAATAAGTTCCTTTTTCATTACCCCACCGCACTCTTCCTCTTCGCCACCGCCTTCCTCCTCCTCCTCCTCTTTCAGCCGTCTCTCGCCGAAGACGATTTACCTGACTGCCCAACTGGTCTCCGCTGTTATTTTCCATCGCCTCCTCCCTCAGGAAATGGCAGGACAAGGAAAAAGATTATCATCGGGGTATGCAGTAGTGTTGGAGCTTTGCTTTTAATCTTTCTTGTTCTTGGCATCTGCTACCTATATCGTCAACGTCGTCGTAGAAGGTCTCATGCGTTGCCATATGTGCAACGAAGCATTTCATCAAATCCGTCAAATCCCACAAATCCATCTCCTGTGGAAGAAGTTGAGAATGGAGGTACCTACTTGGGCGTTCAACTCTTCTCCTATAAAGAACTTGAAGAAGCCACAAACCATTTTGACTCCAACAAAGAGCTTGGAGATGGAGGCTTTGGCACTGTGTATTATGGCTTACTCAAGGATGGGCGTGCCGTTGCTGTCAAACGGTTGTTTGAAGGTAATTTTAAGAGAGTTGAGCAGTTCATGAATGAGGTGGAGATCCTTGCTCGCTTGCGTCACCGCAACCTTGTTTCGCTTTACGGTTGCACCTCGCGCAGTAGCCGTGAGCTTCTGCTTGTGTACGAATACGTCCCAAATGGCACGGTGGCTGATCACCTCCATGGAAAACTAGCAAAGTCTGGCAAGCTTCCATGGTCTACAAGAATGAAGATTGCTATAGAGACTGCAAGTGCTTTGGTGTATCTTCATGCTTCTGAAATCATCCACCGTGATGTCAAAACCAACAACATTCTCCTCGACAACACCTACTGCGTTAAAGTAGCCGATTTCGGATTGTCCCGTCTCTTCCCACTCGATGTCACACACGTTTCCACCGCTCCACAAGGCACTCCTGGCTATGTCGATCCAGAGTACCATCAGTGCTACCAACTCTCTGACAAAAGTGACGTCTTCAGCTTCGGTGTGGTACTTGTTGAACTCATATCCTCAATGCCTGCTGTTGACATCACAAGGCATAGACAAGAGATCAACCTATTCAACATGGCCATCAACAAGATCCAAAACTGCGCACTACATGAATTCGTCGACCCATCGCTCGGTTTCGAATCGGACTACAAAATCCAAGAGATGATAACCAGCGTAGCCGAGTTGGCGTTTCGATGCCTGCAAAGTATGAAAGACGAGAGACCAACAATGATGGAAGTTCTCGACACTCTTAACATCATACAGAAACAAAACGCCGACAAGGTAACAGATCGAGAGGCCGACATTTCAGACGATGCTGTATTGCTAAAGAATGGCTATGGATCTTCTCCAAGTTCCATGTCTGTATCTTGGGTTAGCAGTAACACCTCAATAGCAACCAATGAAACCATCAGCTCTTAA 1410 46.81 MNKFLFHYPTALFLFATAFLLLLLFQPSLAEDDLPDCPTGLRCYFPSPPPSGNGRTRKKIIIGVCSSVGALLLIFLVLGICYLYRQRRRRRSHALPYVQRSISSNPSNPTNPSPVEEVENGGTYLGVQLFSYKELEEATNHFDSNKELGDGGFGTVYYGLLKDGRAVAVKRLFEGNFKRVEQFMNEVEILARLRHRNLVSLYGCTSRSSRELLLVYEYVPNGTVADHLHGKLAKSGKLPWSTRMKIAIETASALVYLHASEIIHRDVKTNNILLDNTYCVKVADFGLSRLFPLDVTHVSTAPQGTPGYVDPEYHQCYQLSDKSDVFSFGVVLVELISSMPAVDITRHRQEINLFNMAINKIQNCALHEFVDPSLGFESDYKIQEMITSVAELAFRCLQSMKDERPTMMEVLDTLNIIQKQNADKVTDREADISDDAVLLKNGYGSSPSSMSVSWVSSNTSIATNETISS 469
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24275353 24280275 + MELO3C017322.2.1 Cme02g01727 321616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01727 469 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 56 456 IPR044652 -
Cme02g01727 469 ProSitePatterns Protein kinases ATP-binding region signature. 148 170 IPR017441 GO:0005524
Cme02g01727 469 Gene3D Phosphorylase Kinase; domain 1 115 218 - -
Cme02g01727 469 Pfam Protein kinase domain 143 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01727 469 SUPERFAMILY Protein kinase-like (PK-like) 127 426 IPR011009 -
Cme02g01727 469 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 56 456 - -
Cme02g01727 469 ProSitePatterns Serine/Threonine protein kinases active-site signature. 262 274 IPR008271 GO:0004672|GO:0006468
Cme02g01727 469 SMART serkin_6 142 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01727 469 ProSiteProfiles Protein kinase domain profile. 142 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01727 469 Gene3D Transferase(Phosphotransferase) domain 1 219 431 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01727 Cme12g01864 CCT
Cme02g01727 Cme12g01864 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01727 Cme-Chr2:24275353 Cme12g01858 Cme-Chr12:24854691 1.59E-176 dispersed
Cme03g00794 Cme-Chr3:14923371 Cme02g01727 Cme-Chr2:24275353 1.95E-15 transposed
Cme05g00915 Cme-Chr5:12420118 Cme02g01727 Cme-Chr2:24275353 1.38E-19 transposed
Cme10g00237 Cme-Chr10:1558148 Cme02g01727 Cme-Chr2:24275353 3.34E-156 wgd
Cme12g01864 Cme-Chr12:24879168 Cme02g01727 Cme-Chr2:24275353 2.30E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64704 PF00069 Pkinase 9.40E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01727 - - cmo:103494139 803.127