Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01729 ATGAAAAAGGCGAAAACCCAGAGCTGCAGCAGCACGAAACTGGGAGCCGAAACCGTAACGAGAAGAATTTTTGGTGAAGGAGGCGCTGGATATAGGTCGGAATTTCAGAGGAGAGTTCTTGCTGAGGGAGGTTTTAGGGAGATGGCGACGCCGTTGACAGGGCTACAGCATAGGGACGGTGGCGGAGGAGTGGCCTTTTTGGCTAATTCTGTTAATAAAATGGATTCCGCTTCGTCTCCGTCGTCGCCTAATGATTGTTTGAGGAGTTCTGAGCCACAGTCTCCGATTCTTATTTTCCTTTTCTTCCACAAAGCAATTCGTAATGAGCTTGATACGCTTCACCGGTTGGCTATGGCCTTTGCCACCGGGCAGAGAGCAGATATTCGGCCGCTATTTGAACGATACCATTTTTTGAGATCGATTTACAAGCACCACTCCAATGCTGAAGACGAGGTAATTTTTCCTGCCCTTGATATTCGTGTGAAGAATGTGGCTCAGACATATTCCCTTGAACACAAGGGTGAAAGCAATTTGTTTGATCATCTTTTTGAGCTTCTTAATTGTAATACACAAAATGATGAAAGCTTCCCAAGGGAGTTAGCGTCCTGCACTGGTGCCCTAAAGACATCTGTGAGCCAGCACATGGCTAAGGAAGAAGAGCAGGTATTTCCCTTGCTTATAGAAAAGTTCTCCTTGGAAGAGCAAGCATCTCTCGTTTGGCAGTTCTTTTGCAGTATTCCTGTGTACATGATGGCTCAATTCCTCCCTTGGCTTTCATCATCTGTTTCATCTGATGAATTTCAGGATCTACAGAAATGCTTAATTAAAGTAGTCCCTGAGGAAAAGCTTCTCCAACAGGTCATATTTACTTGGATGGAAGCAAGAAGTTGTGGTGATGTATCAACAAGTTGTTCCGGTGATTCTCTAGTTGAATATCATACAGATCCTACTACTGATACATCAAATCATCAAACCGAAAATGTAAATTGTGCTTGTGCATTGACAAGCACTGGAAAAAGAAAATACGTAGAGTCAAGTGACGATATATCGGATTATGTGGTAACTCATCCAATCAATGAAATACTGTTCTGGCACAATGCCATCAAAAGAGAGTTGAATGACATAGCTGAGGAAGCTAGGAAGATACAACTTTCTGGGAACTTTAGTAATCTATCAACTTTTAACGAGAGGTTGCAATTCATTGCTGAAGTTTGCATATTTCATAGTATTGCTGAGGACAAGGTAATCTTTCCTGCAGTAGATGGAGAGTTTTCTTTTCTCCAGGAGCATGCTGAAGAAGAAAGTCAATTCAATGAGTTTAGGTGCCTGATTGAAAATATTCAAAGTGCAGGGGCTAATTCTACTTCAAGAGCTGAGTTTTACGTGAAGTTGTGTTCTCATGCTGATCAAATAATGGATACCATTAAAAGGCACTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCTAGAAAGCACTTCAGTTTCAAGAGGCAACGGGAATTGTTGTATCAAAGTTTGTGCATGATGCCTTTGAAATTGATTGAACGTGTCTTGCCATGGTTGGTAGGATCGGTGAAAGAAGATGAAGCTAGAGATATTCTCAAGAACATTCAGTTGGCAGCTCCAGCTAAAGATACTGCTTTGGTGACGCTCTTTTCTGGTTGGGCCTGCAAAGCTCGTAATAATGGTTTGTGCTTGTCTTCAAGAGCAGTTGGCTGTTGTGCAGTTAAAAGGCTTACTGACATTGAAGAAGACATTGTTCAATCATCTTGTTCATGTGCCACTTCATTGGCTGCAAGGGAAGGTCCAAAATCAGATAACAAAACTAATGCTAATGTCAAGAGGCTCACCATACGAAATGTACGATTGCCATGTGGAAGCTGTGATGGGCGTATTACTTCAGAGACTGTTAATGTCCAGAAACAGTGTTGTAGTGATCAGTCCTGCCGTGTTCCAGCTTTGGGAGTAAACATCAAGAATCTGGGGTTAAGTTCTATTTTCACATCCAAGTCTATGAGATCCTTATCTCCCAGCTCTTGTGCACCATCTCTCAATTCCAGCCTTTTTTCATGGGAAACGGATTGTGGGTCTTCTGATGTTGGGTCTGCAGGACGTCCAATTGATACCATTTTTAAATTTCACAAAGCTATACGCAAAGACTTGGAATATTTAGATGTTGAATCTGGAAAACTTAGTGATTGTGATGGAACATTTCTCCGGCAATTTATTGGAAGATTTCGCCTTCTATGGGGGTTATATAGAGCACATAGTAATGCTGAAGATGATATTGTATTTCCTGCTCTGGAATCCAAAGAGACATTGCACAATGTAAGTCACTCATATACTCTAGACCATAAGCAGGAGGAAAAATTATTTGAGGACATTTCGTGTGTTCTTGCTGAGATTTCAGTCCTCCATGAAAGTTTGCATGAAGTTCCGTTGGATGGGAGTTTTTCCAGAAGTGTTGCTGGGTCCGTTAATATGGCGGGGAAGGATTGCAATAGAAAGTACAACGAGCTTGCTACAAAGCTTCAAGGAATGTGCAAATCTATAAGAGTTACTCTGGATCAGCATATATATAGGGAAGAACTTGAACTTTGGCCGTTGTTTGGAAAACACTTCTCCGTGGAAGAGCAAGACAAAATAGTTGGCCGTATCATTGGAACCACAGGTGCTGAAGTTCTCCAGTCAATGTTGCCATGGGTAACATCAGCACTTACCCAGGACGAACAGAATACTTTGATGGATACATGGAAGCAGGCCACAAAAAACACCATGTTCAATGAATGGCTCAACGAATGTTGGAGAGGGACTGCTTCGTCTACCATAAATGGTGAAACATTGGAAGCTTGTGTTGCTGAAAAAGATTCTGGGCTCATTGAGAGCTTGGACCAAAATGATCAAATGTTCAAGCCTGGTTGGAAAGATATTTTCCGCATGAACCAAAATGAACTTGAATCAGAAATCAGAAAGGTTTATCAGGACTCAACTCTTGATCCAAGGAGAAAAGCATATCTCGTGCAGAATCTTATGACCAGTCGCTGGATTGCTGCACAGCAGAAATTACCTCAAGCAAATATAGAAGATAATTCCAATGGTGAAGATGTAACAGGACGAATGGCATCTTTTCGCTGTGTGGAGAAAAAAGAGTTTGGGTGTGAACATTACAAAAGAAACTGCAAGCTTCTTGCTGCTTGCTGTGGAAAGTTATTTACCTGTCGATTCTGTCATGACAATGTCAGCGACCACTCAATGGACAGGAAAGCAACATCAGAGATGATGTGTATGAACTGCCTAACTATCCAACCAGTTGGGTCGATATGCACAACACCTTCTTGCAATGGATTGTCAATGGCGAAATACTATTGTAATATTTGCAAATTTTTTGATGACGAAAGGGCTGTGTATCATTGCCCATTTTGCAACTTATGCCGTGTTGGGAAGGGTCTTGGGATTGATTTTTTCCATTGCATGATTTGCAATTGTTGCCTTGGGATAAAGCTGGAGAGCCATAAGTGCCTGGAGAAAAGTTTAGAAACGAATTGTCCCATCTGCTGTGATTTCTTATTTACATCCAGTGCAACAGTCAGACCACTACCCTGTGGTCATTACATGCATTCAGCCTGCTTTCAGGCGTACACTTGCAGCCATTATACCTGTCCTATTTGTAGCAAGTCCTTGGGAGATATGGCGGTTTATTTCGGCATGCTTGACGCCTTGTTGGCTGCTGAGGAGCTGCCAGAAGAGTATAGGGATCGTTGCCAGGACATATTGTGCAATGACTGCGAGCGGAAAGGCACATCACGATTCCATTGGCTATATCATAAATGTGGGTATTGTGGATCATACAACACTCGGGTAATCAAGAATGATACCACAATTGCTGATTGCCCCTCTTCCAATCAGTAA 3912 42.08 MKKAKTQSCSSTKLGAETVTRRIFGEGGAGYRSEFQRRVLAEGGFREMATPLTGLQHRDGGGGVAFLANSVNKMDSASSPSSPNDCLRSSEPQSPILIFLFFHKAIRNELDTLHRLAMAFATGQRADIRPLFERYHFLRSIYKHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGESNLFDHLFELLNCNTQNDESFPRELASCTGALKTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFFCSIPVYMMAQFLPWLSSSVSSDEFQDLQKCLIKVVPEEKLLQQVIFTWMEARSCGDVSTSCSGDSLVEYHTDPTTDTSNHQTENVNCACALTSTGKRKYVESSDDISDYVVTHPINEILFWHNAIKRELNDIAEEARKIQLSGNFSNLSTFNERLQFIAEVCIFHSIAEDKVIFPAVDGEFSFLQEHAEEESQFNEFRCLIENIQSAGANSTSRAEFYVKLCSHADQIMDTIKRHFHNEEVQVLPLARKHFSFKRQRELLYQSLCMMPLKLIERVLPWLVGSVKEDEARDILKNIQLAAPAKDTALVTLFSGWACKARNNGLCLSSRAVGCCAVKRLTDIEEDIVQSSCSCATSLAAREGPKSDNKTNANVKRLTIRNVRLPCGSCDGRITSETVNVQKQCCSDQSCRVPALGVNIKNLGLSSIFTSKSMRSLSPSSCAPSLNSSLFSWETDCGSSDVGSAGRPIDTIFKFHKAIRKDLEYLDVESGKLSDCDGTFLRQFIGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISCVLAEISVLHESLHEVPLDGSFSRSVAGSVNMAGKDCNRKYNELATKLQGMCKSIRVTLDQHIYREELELWPLFGKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNTLMDTWKQATKNTMFNEWLNECWRGTASSTINGETLEACVAEKDSGLIESLDQNDQMFKPGWKDIFRMNQNELESEIRKVYQDSTLDPRRKAYLVQNLMTSRWIAAQQKLPQANIEDNSNGEDVTGRMASFRCVEKKEFGCEHYKRNCKLLAACCGKLFTCRFCHDNVSDHSMDRKATSEMMCMNCLTIQPVGSICTTPSCNGLSMAKYYCNICKFFDDERAVYHCPFCNLCRVGKGLGIDFFHCMICNCCLGIKLESHKCLEKSLETNCPICCDFLFTSSATVRPLPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRDRCQDILCNDCERKGTSRFHWLYHKCGYCGSYNTRVIKNDTTIADCPSSNQ 1303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24301944 24311228 + MELO3C017320.2.1 Cme02g01729 321618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01729 1303 PANTHER CHY ZINC FINGER PROTEIN 77 1299 - -
Cme02g01729 1303 SUPERFAMILY CHY zinc finger-like 1048 1110 IPR037274 GO:0008270
Cme02g01729 1303 CDD Hr-like 709 869 - -
Cme02g01729 1303 Pfam Zinc-ribbon 1230 1287 IPR039512 -
Cme02g01729 1303 CDD Hr-like 360 488 - -
Cme02g01729 1303 SUPERFAMILY Zinc hairpin stack 1120 1176 IPR037275 -
Cme02g01729 1303 Gene3D nmb1532 protein domain like 93 243 - -
Cme02g01729 1303 Gene3D nmb1532 protein domain like 359 506 - -
Cme02g01729 1303 ProSiteProfiles Zinc finger CTCHY-type profile. 1119 1182 IPR017921 -
Cme02g01729 1303 CDD Hr-like 98 224 - -
Cme02g01729 1303 Pfam CHY zinc finger 1054 1129 IPR008913 GO:0008270
Cme02g01729 1303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1176 1227 IPR013083 -
Cme02g01729 1303 ProSiteProfiles Zinc finger CHY-type profile. 1047 1116 IPR008913 GO:0008270
Cme02g01729 1303 SUPERFAMILY RING/U-box 1182 1228 - -
Cme02g01729 1303 Gene3D nmb1532 protein domain like 702 933 - -
Cme02g01729 1303 ProSiteProfiles Zinc finger RING-type profile. 1183 1225 IPR001841 -
Cme02g01729 1303 Gene3D - 1254 1297 - -
Cme02g01729 1303 SMART ring_2 1183 1224 IPR001841 -
Cme02g01729 1303 Pfam Hemerythrin HHE cation binding domain 100 226 IPR012312 -
Cme02g01729 1303 Pfam Hemerythrin HHE cation binding domain 707 870 IPR012312 -
Cme02g01729 1303 Pfam Hemerythrin HHE cation binding domain 356 490 IPR012312 -
Cme02g01729 1303 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 77 1299 - -
Cme02g01729 1303 CDD RING-H2_Pirh2 1182 1225 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01729 Cme-Chr2:24301944 Cme04g00372 Cme-Chr4:2948953 8.99E-49 dispersed
Cme02g01912 Cme-Chr2:25553183 Cme02g01729 Cme-Chr2:24301944 7.58E-18 transposed
Cme10g00240 Cme-Chr10:1578014 Cme02g01729 Cme-Chr2:24301944 1.16E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01729 K16276 - csv:101215023 2519.58