Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01735 ATGGCTGATCATGATTTCACTTCCTCTTTCCCTCTTGAAGATCCAAATTTAGAACTCATGGCTTCTCATTTTTCTCCTTCAATTCCCAATTTCACTCACTTTTTGCCATTCTCCACCACTAATACAGAAATATTTTCACAATTTATTCCACCAAATTTCCCAGAAAATAATGCTACTTCGTCTTTTACTACTTCCCCTGTTTTGCCTTCTCACTCTGTTTTCGGCCCACCTGCTCCTACTCCCTCCGTTTCTACTACTACTCATCACTTCCATGATATCAATAACCACAAGAGAAAATCTATGCCTATGGATGTTTCCGAAAGTACTTCTGGAATTTCCACTCCTCAAGTTTCTGAATCTGGGTTCAACACTAAATATAGCTCTGGGAAAGGGAAGAGGTTGAAAAGCTTAGAGAAAGAAGAGGAGAAATCAACTAGAGAAGTGGTTCATGTTAGAGCTAGAAGAGGCCAAGCCACTGATAGCCACAGTTTAGCTGAAAGGGTGAGAAGAGGAAAAATCAATGAAAGACTAAGATGCTTGAAAGACATTGTCCCAGGATGCTACAAGACCATGGGCATGGCAGTAATGTTGGATGAGATAATTAATTATGTCCAGTCTCTACAGAATCAAGTGGAGGTGACAGTGTTGTTCTTCAAACTATCTATTTATCTATCTATATAA 681 39.21 MADHDFTSSFPLEDPNLELMASHFSPSIPNFTHFLPFSTTNTEIFSQFIPPNFPENNATSSFTTSPVLPSHSVFGPPAPTPSVSTTTHHFHDINNHKRKSMPMDVSESTSGISTPQVSESGFNTKYSSGKGKRLKSLEKEEEKSTREVVHVRARRGQATDSHSLAERVRRGKINERLRCLKDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEVTVLFFKLSIYLSI 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24345556 24347334 + MELO3C017314.2.1 Cme02g01735 321624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01735 226 MobiDBLite consensus disorder prediction 131 145 - -
Cme02g01735 226 MobiDBLite consensus disorder prediction 99 145 - -
Cme02g01735 226 Pfam Helix-loop-helix DNA-binding domain 161 208 IPR011598 GO:0046983
Cme02g01735 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 207 IPR011598 GO:0046983
Cme02g01735 226 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 213 IPR024097 GO:0006355
Cme02g01735 226 Gene3D - 152 215 IPR036638 GO:0046983
Cme02g01735 226 MobiDBLite consensus disorder prediction 104 130 - -
Cme02g01735 226 Coils Coil 134 154 - -
Cme02g01735 226 PANTHER TRANSCRIPTION FACTOR BEE 1 7 213 - -
Cme02g01735 226 SMART finulus 163 213 IPR011598 GO:0046983
Cme02g01735 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 214 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01735 Cme12g01876 CCT
Cme02g01735 Cme12g01876 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01735 Cme-Chr2:24345556 Cme07g00258 Cme-Chr7:1678327 4.84E-30 dispersed
Cme06g01593 Cme-Chr6:16349486 Cme02g01735 Cme-Chr2:24345556 1.46E-37 transposed
Cme12g01876 Cme-Chr12:24949054 Cme02g01735 Cme-Chr2:24345556 5.33E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40920 PF00010 HLH 3.50E-05 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01735 - - cmo:103494130 397.127