Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01738 ATGAAGCGTTTCGGGTTTAACGTTGAAGAAACTATTGTGGTTTTGCGTCATGCTGCTTTGGAGAAGCCTTTCCTTCCATATTTGGTTCCTCTGTTTTTTCTTGCTTGGGCTTTCGATAAATGGGTTTTTTCTTTCTCTAATTGGATTCCACTTGCTATTGCCGTGTGGGCGACTTTACAGTATGGAAGTTTTCAACGTCAACTACTAGTAGAGGAGTTGAACAAGAAATGGAAGCAAATTATATTAGACACCTCGCCCAGTACACCACTTGAGCACTCTGAATGGTTAAATAAGCTGTTGACGGAGATTTGGCCTAACTACATCAACCCAAAACTTTCATTAAAGTTCTCTACTATTGTTGAGAAACGATTAAAACACCGGAGGCCGAAACTTATTGAGAGAATAGAATTGTTGGAGTTCTCTTTAGGCTCATGTCCTCCTGGCTTGGGCCTTCGTGGGACTCAATGGTCAACATCTGGCAATCAGAGAATCATGCGTTTGGGTTTTGATTGGGACACAAATGAAATGAGTATTATGTTGCTTGCCAAGTTGGCCATGCCATTTACTGGAACTGCACGGATTGTTATCAATAGCATTCACATAAAGGGTGATCTTCTCTTGAGGCCTATCTTGGATGGGAGAGCAATTTCGTATTCATTTGTTTGCACTCCAGAAGTGAGAATAGGAGTTGCTTTTGGAAGTGGTGGAAGCCAGTCGTTACCTGCAACTGAGCTGCCGGGTGTTTCTTCTTGGCTGGTTAAACTTCTAACAGACGTTATAGTAAGGACAATGGTTGAACCTCGACGCCGCTGTTTCTCCTTGCCAGCTTTTGATCTGGGTAAAAAGGCTGTTAGTGGTACAATATATGTGACAGTCATCTCAGCCAGTAAGCTTTCCAGAAACAGCTTGAGAGGAAACTCTTCCAGGAAACCACTGAGTACTTATATGAATAGTCCACTAGACGAAAACTTAACTGATAAGGATGAATTGCAGACATTTGTCGAGGTGGAACTTGATGAGCTAAGTAGGAGGACTGCTGTAAGATTAGGCTCCAACCCTGTATGGAATTCCACATTCAATATGATTCTACATGAAGATACAGGAACTCTTCGGTTCAATTTATATGAGTCAAATCCAAGCAATGTGAAGTATGACTATCTAGCCAGTTGTGAAGTAAAGATGAAGTACGCTGCTGATGATTCTACAACATTTTGGGCAATAGGATCTGACTCTGAAGTAACTGCAAAGCACAGTGAGTTTTGTGGAAAAGAGGTCGAAATGGTTGTCCCATTTGAAGGAGTCGATTGTGGGGAGTTAACAGTGAAGTTTATTGTTAAAGAGTGGCAATTTTCAGATGGTTCACATAGCTCGCATAATTTTCATGTCAGACCTCAACAATCAGTTAATGGATCTTCAAACTATGCTTCAAGGACTGGAAGGAAGATTGCCATTACCCTTGTAGAAGGAAAAGATCTTAGTTTGAAGGATAAATCTGGGAAGTGTGAGTCATATGTAAAATTGGAATATGGGAAGGCTTTCCTGAAAACAAGAACTGCTATTTCTGTAAATCCTAATTGGAATCAGAAGTTTGAGCTTGATGAGATTGGAGGTGGTGAATACCTCAAGATAAAATGCTTTGGTGTAGATATATTCGGTGACGAAAATATTGGTACTGCCCGAGTTAATTTGGAAGGACTTCATGAAGGAATAGTCAGGGATGTATGGGTCCCCCTCGAAAAAGTAAATTATGGAGAACTAAGGCTAATGATAGAGGCAGTCAAGGCAGATGACTATGAAGGATCACGGGGTTCAAACATAGGCTCAAATAATGGTTGGATAGAACTTGTTATCATAGAAGCTAAAGATTTGGTTGCTGCTGATATTGGAGGGACAAGCGACCCTTATGTAAGAGTACAATATGGAAACTTGAAGAAAAGAACAAAGGTTATGTTCAAAACTTTAAATCCTCATTGGAATCAGACCTTAGAGTTCCCTGATGATGGCAGCCCTTTACTGTTGCATGTGAAAGACCACAATGCTTTACTACCCACATCAAGCATAGGCGACTGTGTTGTCGAGTATCAAAGATTGCCTCCAAACCAAATGGCTGACAAATGGATACCTCTTCAAGGGGTTAAACGAGGAGAGATCCACATCCAAATCACAAGAAAAGTTCCAGATGTAGAGAAAGAGAGAAGACTTAGTTTAGAACCCGCCTCGGATTCTGAATCATCTGTCACCAAGGCACATCAAGTTTCAAGTCAGATGAAGCAGACAATCAGCAAGTTTCACGCTTTAATCGAGGAGGCTAATCTTGACGGTCTTTCGGCATCGTTGAATGAACTAGAAAGCCTGGAGGAACTGCAAGAGGAATATATATTACAACTTGAAACTGAACAAACGCTTCTTATAAATAAGGTAAAGGAGCTTGGCCAGGAAATTCTTAGTTCTCCTTCATCAATTAGTTGGAAATCTTCTGGAAATTGA 2487 40.77 MKRFGFNVEETIVVLRHAALEKPFLPYLVPLFFLAWAFDKWVFSFSNWIPLAIAVWATLQYGSFQRQLLVEELNKKWKQIILDTSPSTPLEHSEWLNKLLTEIWPNYINPKLSLKFSTIVEKRLKHRRPKLIERIELLEFSLGSCPPGLGLRGTQWSTSGNQRIMRLGFDWDTNEMSIMLLAKLAMPFTGTARIVINSIHIKGDLLLRPILDGRAISYSFVCTPEVRIGVAFGSGGSQSLPATELPGVSSWLVKLLTDVIVRTMVEPRRRCFSLPAFDLGKKAVSGTIYVTVISASKLSRNSLRGNSSRKPLSTYMNSPLDENLTDKDELQTFVEVELDELSRRTAVRLGSNPVWNSTFNMILHEDTGTLRFNLYESNPSNVKYDYLASCEVKMKYAADDSTTFWAIGSDSEVTAKHSEFCGKEVEMVVPFEGVDCGELTVKFIVKEWQFSDGSHSSHNFHVRPQQSVNGSSNYASRTGRKIAITLVEGKDLSLKDKSGKCESYVKLEYGKAFLKTRTAISVNPNWNQKFELDEIGGGEYLKIKCFGVDIFGDENIGTARVNLEGLHEGIVRDVWVPLEKVNYGELRLMIEAVKADDYEGSRGSNIGSNNGWIELVIIEAKDLVAADIGGTSDPYVRVQYGNLKKRTKVMFKTLNPHWNQTLEFPDDGSPLLLHVKDHNALLPTSSIGDCVVEYQRLPPNQMADKWIPLQGVKRGEIHIQITRKVPDVEKERRLSLEPASDSESSVTKAHQVSSQMKQTISKFHALIEEANLDGLSASLNELESLEELQEEYILQLETEQTLLINKVKELGQEILSSPSSISWKSSGN 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24364212 24371060 + MELO3C017311.2.1 Cme02g01738 321627

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01738 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 607 722 IPR035892 -
Cme02g01738 828 Pfam C2 domain 286 395 IPR000008 -
Cme02g01738 828 Pfam C2 domain 481 578 IPR000008 -
Cme02g01738 828 Pfam C2 domain 613 709 IPR000008 -
Cme02g01738 828 ProSiteProfiles C2 domain profile. 594 707 IPR000008 -
Cme02g01738 828 ProSiteProfiles C2 domain profile. 464 576 IPR000008 -
Cme02g01738 828 PANTHER OS01G0128800 PROTEIN 6 819 - -
Cme02g01738 828 SMART C2_3c 287 406 IPR000008 -
Cme02g01738 828 SMART C2_3c 481 575 IPR000008 -
Cme02g01738 828 SMART C2_3c 612 706 IPR000008 -
Cme02g01738 828 ProSiteProfiles C2 domain profile. 266 406 IPR000008 -
Cme02g01738 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 480 592 IPR035892 -
Cme02g01738 828 CDD C2 613 709 - -
Cme02g01738 828 Coils Coil 775 802 - -
Cme02g01738 828 Gene3D C2 domain 285 431 IPR035892 -
Cme02g01738 828 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 89 275 IPR031468 GO:0008289
Cme02g01738 828 CDD C2 484 578 - -
Cme02g01738 828 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 279 398 IPR035892 -
Cme02g01738 828 Gene3D C2 domain 600 724 IPR035892 -
Cme02g01738 828 Gene3D C2 domain 461 595 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01738 - - - csv:101204113 1516.52
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01738 Cme12g01877 CCT
Cme02g01738 Cme12g01877 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01738 Cme-Chr2:24364212 Cme04g00428 Cme-Chr4:3376654 1.14E-07 dispersed
Cme07g01938 Cme-Chr7:24572605 Cme02g01738 Cme-Chr2:24364212 4.12E-07 transposed
Cme12g00933 Cme-Chr12:16339825 Cme02g01738 Cme-Chr2:24364212 1.49E-15 transposed
Cme12g01664 Cme-Chr12:23658277 Cme02g01738 Cme-Chr2:24364212 2.58E-09 transposed
Cme07g00589 Cme-Chr7:5105647 Cme02g01738 Cme-Chr2:24364212 5.52E-08 transposed
Cme12g01877 Cme-Chr12:24957117 Cme02g01738 Cme-Chr2:24364212 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g316 Blo04g00823 . Bda06g00806 . . . . . Cmo13g01065 Cmo18g00035 . Cma11g00273 Car10g00217 Car11g00249 . Cpe20g00121 . . . . . . . . . . . . . . . . . Cone13ag0280 . Lsi02g00181 Csa01g00664 Chy12g01439 Cme12g01877 . Blo15g00070 . Bda14g00929 . Bpe15g00523 Bma03g00894 . Sed08g2181 Cmo10g00245 Cmo11g00278 Cma13g01024 Cma18g00042 Car13g00859 Car18g00036 Cpe09g01138 . Bhi08g01232 Tan05g2269 Cmetu12g1130 Lac10g0236 Hepe07g2393 . . Cla04g01093 Cam04g1144 Cec01g1654 Cco01g1703 Clacu04g1172 Cmu04g1153 Cre01g1448 . Csa01g00387 . Cme02g01738
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002821 1 3 2 1 1 1 4 1 2 1 1 2 3 2 2 3 2 1 2 1 2 2 2 2 2 1 2 3 2 2 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01738 Cme_Chr02 FPKM 19.041983 21.291874 24.316088 25.122599 13.709904 18.073868 11.301781 48.568203 46.638351 42.356537