Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01739 AATTTTTCATTACACACACTCGAAAAAATCCCGGGAGACTCTTTAGGTAAAAATCTTATCCACCTTCTTCTTCTTCTTCTTCTTCTTCTTTGTGTTGAAGCTTCTCTTGTTCCACTCTGCAACCGTGGCTTTGTTTTTCCTCTTGCTGACTTCAATGCCGGACGAAACCAATCAAACAATGCATTTCAGCTTCAATTGTTGATTAACCTTATAGAAATGGCCTTTGCAACTGCCAAACTATCTGAACTTCCATTCAAGACCTCATTTCCACTCTCCTCCCACTCCCGTACACTTCTCTCAAATCATCCCAATTTCTCTTTGCAGATTCTTAACACTTTCTCTTCTCTCCGTACCCACACTGAGCATAGCGGCAAAAGAATCCCTAAAACCTCCCACAATTCTGCATCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTGGGTCTCCAAATGGCCTCCTGGGAGCTCGCGGAATGATCGTAAAGTCGAGAAGAAGGTGGTCCAACCGTCCCGATATGATCGGACTGATCGAGCGGAGAATCAGACCGAGTACTTAGATAAGGATAAGGGGCAGACTGCAATTGAGCGAATCGTGCTTCGCTTACGGAATTTAGGGATAGGTTCAGATGATGAGGACGAGGACGAGGAGGATGGAGATGATAACGGATTGTATTCTCGCGAGGCAAGGCTGGTGACTGGGGAGGAAACACTTGGGGATTTACTTCAACGTGAATGGATTCGACCCGATGCCTCATTGTATTCGAATGAGGATGGGGAGGATGGAATGGTTTTACCTTGGGAAAGAGAGGAGGAAAGGGGTGAAGAGGAGGAGTGTGGAAGGGGGTCGAAGAGGAGAAAGATGAAGGCTCCGACATTAGCTGAATTGACTATTGAAGATGAGGAGCTGAGGCGATTGAGGAGAATGGGGATGTTTATTAGAGAGCGGATTAATGTACCGAAAGCGGGGATTACACAGGCAGTGTTGGAGAAGATTCATGGGAAATGGAGGAAGGAGGAATTGGTAAGGCTTAAGTTCCATGAGGAGCTTGCGCATGATATGAAGACAGCACATGAGATTGTAGAGCGACGAACTGGGGGATTGGTTCTATGGAGGTCTGGAAGTGTTATGGTTGTTTACCGCGGTAGTAACTATGAAGGACCTTCTAAAACTAAACCCGTTACAAGGGAGGGAGATGGGGTATTCATCCCAGATGTTTCTTCTGCTGCCACTTCAACAAGTGACAATGTTGCAGCTTCAGCTCCAGAGAAGACTACGATGCCGATTGGGCCTCCAAAGTCTAACGACGGCTTGTCAGAGGAAGAAGCTGAATACAACCAACTATTAGATGGTTTAGGTCCTCGTTTTGTTGAATGGTGGGGCACAGGAGTGCTTCCTGTTGATGCCGATCAGCTTCCTCCAATTGTTCCTGGTTACAAAACTCCTTTCAGGCTTCTTCCAACTGGAATGCGTTCTCGACTTACCAATGCAGAGATGACTCAGATGAGGAAACTTGCAAAATCCTTACCTTGTCATTTTGCCCTTGGGAGAAATAGGAACCATCAGGGTTTGGCTGTTGCTATACTTAAACTTTGGGAAAAAAGCCTAGTAGTTAAAATTGCTGTCAAAAGAGGCATACAGAACACCAATAATAAACTCATGGCCGAGGAGATAGGGAACTTAACAGGAGGTGTGTTACTATTGAGGAATAAATATTTTATCGTCATATACCGTGGGAAGGATTTTCTCCCACCAAGTGTAGCTGTAGCTTTGGCAGAAAGGCAGGAATTAACGAAAAAGATTCAAGATGTGGAAGAGAAAGCTCGAAGTAAAGCGGTCGAGGCAACTTCATCAAGCATTGATGGACAGGCACCTGCAGGTACCTTGGCCGAATTCTATGAGGCTCAGTCCAGGTGGGGAAGGGAAATAACTGCTGAAGACCGTGAAAAAATGGTTGAAGAAAGCTCCAGAGCAAAAACTGCAAGACTTGTCAGACGAATTGAACACAAGCTAGGTGTTGCCCAAGCGAAGAAACTTAGAGCAGAAAAATTGCTATCTAAAATCGAAGCATCCATGGTTCTTTCTAGCCCCGATGATGACCAGGAAACAATAACAGATGAGGAACGAGTCATGTTTCGGAGGGTTGGGTTACGAATGACCGCATATTTACCTATGGGCATTCGTGGTGTCTTTGATGGTGTTGTTGAAAACATGCATTTACACTGGAAGCATAGAGAGCTTGTGAAGTTAATTAGCAAGCAAAAAACACTTGCTTTTGTGGAAGAAACTGCAAGATTGTTAGAGTATGAGAGTGGTGGAATACTTGTTTCGATAGATAGAGTTCCAAAAGGATATGCCCTTGTTTACTATCGTGGAAAGAATTATCGTCGACCCATTACCTTGAGACCAAGAAACTTACTTACAAAGGCAAAAGCATTAAAGCGCTCAGTTGCCATGCAGCGTCACGAGGCTCTCAGTCAGCACATATCTGAACTCGAGAAAAACATAGAGCAAATGAAGAAAGAAATTGGTGTCACTGAAGATTCAGATGATGAAAATAAATTGACGTCTCAGGATCGGCTTGTCTCAGAATCTTTCCACGACAAGGAAGCATATTTGTCCGCGTTTTCAGATGTTGACAATGATGAAGATAGCAATGATGAAGACAGTGAATATGAAGAGGATGAAGATGACGATTTTGATTTTTCCGACTCAGAAAGCACTGATGATCTACTGAACTAG 2751 44.06 NFSLHTLEKIPGDSLGKNLIHLLLLLLLLLCVEASLVPLCNRGFVFPLADFNAGRNQSNNAFQLQLLINLIEMAFATAKLSELPFKTSFPLSSHSRTLLSNHPNFSLQILNTFSSLRTHTEHSGKRIPKTSHNSASPSSSSSSSSSSSSTWVSKWPPGSSRNDRKVEKKVVQPSRYDRTDRAENQTEYLDKDKGQTAIERIVLRLRNLGIGSDDEDEDEEDGDDNGLYSREARLVTGEETLGDLLQREWIRPDASLYSNEDGEDGMVLPWEREEERGEEEECGRGSKRRKMKAPTLAELTIEDEELRRLRRMGMFIRERINVPKAGITQAVLEKIHGKWRKEELVRLKFHEELAHDMKTAHEIVERRTGGLVLWRSGSVMVVYRGSNYEGPSKTKPVTREGDGVFIPDVSSAATSTSDNVAASAPEKTTMPIGPPKSNDGLSEEEAEYNQLLDGLGPRFVEWWGTGVLPVDADQLPPIVPGYKTPFRLLPTGMRSRLTNAEMTQMRKLAKSLPCHFALGRNRNHQGLAVAILKLWEKSLVVKIAVKRGIQNTNNKLMAEEIGNLTGGVLLLRNKYFIVIYRGKDFLPPSVAVALAERQELTKKIQDVEEKARSKAVEATSSSIDGQAPAGTLAEFYEAQSRWGREITAEDREKMVEESSRAKTARLVRRIEHKLGVAQAKKLRAEKLLSKIEASMVLSSPDDDQETITDEERVMFRRVGLRMTAYLPMGIRGVFDGVVENMHLHWKHRELVKLISKQKTLAFVEETARLLEYESGGILVSIDRVPKGYALVYYRGKNYRRPITLRPRNLLTKAKALKRSVAMQRHEALSQHISELEKNIEQMKKEIGVTEDSDDENKLTSQDRLVSESFHDKEAYLSAFSDVDNDEDSNDEDSEYEEDEDDDFDFSDSESTDDLLN 916
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24397342 24402466 + MELO3C017309.2.1 Cme02g01739 321628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01739 916 MobiDBLite consensus disorder prediction 160 191 - -
Cme02g01739 916 MobiDBLite consensus disorder prediction 883 916 - -
Cme02g01739 916 SMART CRS1_YhbY_2 301 384 IPR001890 GO:0003723
Cme02g01739 916 SMART CRS1_YhbY_2 497 581 IPR001890 GO:0003723
Cme02g01739 916 SMART CRS1_YhbY_2 707 794 IPR001890 GO:0003723
Cme02g01739 916 MobiDBLite consensus disorder prediction 120 191 - -
Cme02g01739 916 ProSiteProfiles CRM domain profile. 705 805 IPR001890 GO:0003723
Cme02g01739 916 Gene3D - 496 589 IPR035920 -
Cme02g01739 916 Gene3D - 299 396 IPR035920 -
Cme02g01739 916 Gene3D - 706 809 IPR035920 -
Cme02g01739 916 MobiDBLite consensus disorder prediction 390 444 - -
Cme02g01739 916 ProSiteProfiles CRM domain profile. 299 395 IPR001890 GO:0003723
Cme02g01739 916 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 75 907 - -
Cme02g01739 916 SUPERFAMILY YhbY-like 706 804 IPR035920 -
Cme02g01739 916 SUPERFAMILY YhbY-like 300 393 IPR035920 -
Cme02g01739 916 MobiDBLite consensus disorder prediction 409 424 - -
Cme02g01739 916 SUPERFAMILY YhbY-like 497 589 IPR035920 -
Cme02g01739 916 MobiDBLite consensus disorder prediction 129 157 - -
Cme02g01739 916 ProSiteProfiles CRM domain profile. 495 592 IPR001890 GO:0003723
Cme02g01739 916 Coils Coil 825 852 - -
Cme02g01739 916 MobiDBLite consensus disorder prediction 876 916 - -
Cme02g01739 916 Coils Coil 590 617 - -
Cme02g01739 916 Pfam CRS1 / YhbY (CRM) domain 302 384 IPR001890 GO:0003723
Cme02g01739 916 Pfam CRS1 / YhbY (CRM) domain 497 581 IPR001890 GO:0003723
Cme02g01739 916 Pfam CRS1 / YhbY (CRM) domain 708 794 IPR001890 GO:0003723
Cme02g01739 916 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 75 907 IPR045278 GO:0000375|GO:0003729
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01739 - - - cmo:103494127 1535.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01739 Cme-Chr2:24397342 Cme06g00543 Cme-Chr6:3424151 2.86E-178 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g317 . Blo16g00136 . . . Bpe13g00351 . . . . Cma10g00232 Cma11g00271 Car10g00218 Car11g00248 . . Cpe04g01403 . . . . . . . Cla06g01466 Cam06g1619 Cec06g1682 Cco06g1674 Clacu06g1584 Cmu06g1535 Cre06g2346 . . Cone13ag0281 . . . . . . . . . . . . . . Cmo10g00246 Cmo11g00277 . . . . . Cpe18g00760 . . . . . . . . . . . . . . Lsi06g01329 Csa01g00386 Chy02g02360 Cme02g01739
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010794 0 2 2 0 1 0 2 0 1 0 0 1 1 1 1 2 1 1 1 0 1 1 1 1 1 0 1 5 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01739 Cme_Chr02 FPKM 24.538271 24.940313 22.054588 22.962143 37.394524 34.10384 33.130043 26.605358 29.986021 31.311916