Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01743 ATGCGTATGAGCTGTAATGGATGCCGTGTTCTTCGTAAAGGCTGCAGCGAGAGCTGCTCCATCAGACCCTGTCTTCAATGGATCAAATCCCCTCAATCCCAAGCCAACGCCACTTTCTTCCTCGCCAAATTCTACGGCCGAGCTGGCCTCGTTAACCTAATCAATGCCGGCCCCGACCATCTCCGCCCAGCTATTTTCAAATCTTTGCTATTCGAAGCGTGTGGCCGGATCGTGAATCCCATTTTTGGGTCGGCTGGATTGTTGTGGTCAGGGAGCTGGCAGCTTTGTCAGGATGCCGTCGAAGCTGTTTTGAAAGGCGCGCCGATTCTGCCGGTTTCTTCTGAAACGGCAGCGTCGCACATGGGTCCACCTTTAAAAGGCTGTGATATCCGCCATGTTTCCAAACAGCAAGGCTCAGCCTCCGCTTCAGCGGTTAGGAAGATCAAGACGCGACGGCGGTTCAAACGCTCTGGGACGGCGAACAAGTTGAAGCCGAAGGAGGAGCCGGGTGTGGTGGCGGTACCCGAGTTCATATTTGATGATCAAACCCGGATTGTGTCGGAGCCCCGGTGTTTGAAGTTTGAGCTGGATAATTGGAAGGGTGGTGAGTGGCCGGAGAAAGAGTGCGGGAGCGACGATACGGAGTGCTTGTCGGTGGAGACTGTGGAGGGTTGCCAGGGTGGTGACGTGGAGTTGGAACTAACATTGGGGTTTGGGCAGAGTCGGATGCTGACGTGA 738 54.88 MRMSCNGCRVLRKGCSESCSIRPCLQWIKSPQSQANATFFLAKFYGRAGLVNLINAGPDHLRPAIFKSLLFEACGRIVNPIFGSAGLLWSGSWQLCQDAVEAVLKGAPILPVSSETAASHMGPPLKGCDIRHVSKQQGSASASAVRKIKTRRRFKRSGTANKLKPKEEPGVVAVPEFIFDDQTRIVSEPRCLKFELDNWKGGEWPEKECGSDDTECLSVETVEGCQGGDVELELTLGFGQSRMLT 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24424860 24426670 + MELO3C017305.2.1 Cme02g01743 321632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01743 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 40 1 238 - -
Cme02g01743 245 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Cme02g01743 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 238 - -
Cme02g01743 245 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01743 Cme-Chr2:24424860 Cme08g00636 Cme-Chr8:4118183 1.21E-50 dispersed
Cme06g01685 Cme-Chr6:18625694 Cme02g01743 Cme-Chr2:24424860 6.50E-92 transposed
Cme10g00257 Cme-Chr10:1686542 Cme02g01743 Cme-Chr2:24424860 5.58E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40922 PF03195 LOB 6.20E-22 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01743 - - cmo:103494123 506.908