Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01760 ATGTCGACGGGATCAGCTGTTTGGACCAAAGAAGAAGATAAAGCATTTGAAAATGCTATAGCCACGCATTGGGGTGAAGAATTGGAAGGGAGTAAGGGGTCAGAAGAGATGTGGGAAAAGATTGCTTCCATGGTTCCAAGTAAGAACATGGAAGACTTGAAGCAGCACTATCAAATGCTGGTGGACGATGTTGGTGCTATTGAGGCAGGCCAAATTCCTATTCCTAACTATGCTTCTTCTGTTGGAGAAGAAACTGCTTCCACTAAGGAGAAGGATCATCATCTTCATCCTCACGGAGCTTCTGATAGTAATAAAAGACCAAATTCTGGTTTTGGAAGTGGGTTTTCTGGGCTCTCCCACGACTCGTCTGCCCACGCCACAAAGGGTGGATCCAGGTCTGAGCAAGAAAGAAGGAAAGGAATCCCATGGACAGAGGAAGAACACAGGTTATTTCTACTGGGTCTAGATAAGTTTGGGAAAGGGGATTGGAGAAGCATTTCAAGAAACTTCGTTATATCCCGAACACCGACTCAAGTGGCCAGTCATGCACAGAAGTACTTCATACGATTGAACTCAATGAACAGAGATAGAAGACGATCAAGTATTCATGACATAACCTCAGTTAATAATGGCGGTGGTGGCGATGTCATGTCCCATCAAGCTCCGATCACTGGCCACCAGACAAACGGCACGAACCAGAGTAATCCGCCGGCTTTGGGACCGCCAGGGAAGCACCGGCCTCAACAGCATCTGCCCGGAATAGGCATGTACGGAGCACCTGTTGGGCAACCAGTGGCAGCTCCTCCAGGGCACATAGCATCAGCGGTTGGCACTCCAGTGATGCTTCCTCAAGGAATCCATCCCCATCCTCCATATGTTATGCCAGTTGCTTATCCAATGGCACCTCCACCAATGCACCAATGA 924 48.27 MSTGSAVWTKEEDKAFENAIATHWGEELEGSKGSEEMWEKIASMVPSKNMEDLKQHYQMLVDDVGAIEAGQIPIPNYASSVGEETASTKEKDHHLHPHGASDSNKRPNSGFGSGFSGLSHDSSAHATKGGSRSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGGGGDVMSHQAPITGHQTNGTNQSNPPALGPPGKHRPQQHLPGIGMYGAPVGQPVAAPPGHIASAVGTPVMLPQGIHPHPPYVMPVAYPMAPPPMHQ 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24527011 24528989 - MELO3C017292.2.1 Cme02g01760 321649

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01760 307 MobiDBLite consensus disorder prediction 102 129 - -
Cme02g01760 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Cme02g01760 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 139 189 IPR006447 GO:0003677
Cme02g01760 307 MobiDBLite consensus disorder prediction 223 238 - -
Cme02g01760 307 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Cme02g01760 307 SUPERFAMILY Homeodomain-like 7 66 IPR009057 -
Cme02g01760 307 SUPERFAMILY Homeodomain-like 137 192 IPR009057 -
Cme02g01760 307 CDD SANT 142 187 IPR001005 -
Cme02g01760 307 ProSiteProfiles Myb-like domain profile. 8 61 IPR001005 -
Cme02g01760 307 CDD SANT 8 61 IPR001005 -
Cme02g01760 307 MobiDBLite consensus disorder prediction 223 249 - -
Cme02g01760 307 PANTHER TRANSCRIPTION FACTOR MYBS1 1 305 - -
Cme02g01760 307 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Cme02g01760 307 Gene3D - 2 74 - -
Cme02g01760 307 SMART sant 4 63 IPR001005 -
Cme02g01760 307 SMART sant 139 189 IPR001005 -
Cme02g01760 307 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Cme02g01760 307 Pfam Myb-like DNA-binding domain 8 60 IPR001005 -
Cme02g01760 307 Gene3D - 141 193 - -
Cme02g01760 307 MobiDBLite consensus disorder prediction 85 101 - -
Cme02g01760 307 PANTHER TRANSCRIPTION FACTOR KUA1 1 305 - -
Cme02g01760 307 MobiDBLite consensus disorder prediction 81 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01760 - - - csv:101217344 574.704
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01760 Cme-Chr2:24527011 Cme09g01095 Cme-Chr9:15508324 5.24E-86 dispersed
Cme10g00477 Cme-Chr10:3059754 Cme02g01760 Cme-Chr2:24527011 9.89E-35 dispersed
Cme12g01730 Cme-Chr12:24052504 Cme02g01760 Cme-Chr2:24527011 1.34E-36 dispersed
Cme02g01760 Cme-Chr2:24527011 Cme08g02510 Cme-Chr8:31967111 3.00E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g360 . . Bda06g00488 Bda15g00658 Bpe12g00497 . . . . . Cma10g00245 Cma11g00261 Car10g00232 . . . Cpe04g01413 . . . . . . . Cla06g01481 Cam06g1636 Cec06g1698 Cco06g1694 Clacu06g1602 Cmu06g1551 Cre06g2364 . . Cone13ag0297 Cone19ag0268 . . . . . . . . . . . . . Cmo10g00264 Cmo11g00267 . . . . . Cpe18g00747 . . . . . . . . . . . . . . Lsi06g01345 Csa01g00367 Chy02g02377 Cme02g01760
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006249 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40924 PF00249 Myb_DNA-binding 1.30E-07 CL0123 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01760 Cme_Chr02 FPKM 0.173579 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0