Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01775 ATGCCTGTTTCGACTCGGTCTCAGATCATGAATGACGGACAGATTGATTCAATTCCAGGTCAAGAAGACAAACAGCAACTGAATCTTCCACCTAGGAATCTTCACCATGGATTGAAAGAGAAGATGAAGGCATTAACCCTTTTGTACGAGCAGCAGAAGCTGGCTTCAGCAGCTCTTAAGAGACCGTCACCAAAAGGGGAAGATCTAAGATTCACAACGCATCCGAGTGTTGAGCTGAATGGTTCTTGTAAGAAAGAGGAGAAAGAGCCGAAGCTTGAGAATGTAATGAGAGAAAATGCAATGCCTAATTCAACTGTTACAAGAACTTATGTTCTTCCCCAACCTCCGATGGCTGATGCGAAGGAGAATGTGGTGGTTGGAAGTGATAGGATTGTTGGGTTCTCGTGCTCGAAAAAGGCGAGTTTGTCAACAAATGTGGCGAGGAAATTGTCATTAGGGAACTCAATGCCTGTGGTGGAAATGAAGGAGAAATGTAAGAAATTGCAAGAAATGGAGGAATCGGGGAGTTTTTCAGAGAAGGAAAGTTTGGGGGAGAGTCGGATTTTGGTATTTGTGAGGCTGAGACCGATGGCCAAGAAGGAAAAGGATGCTGGATCTAGGAGTTGTGTTAAAATAGTGAATAGAAGAGATCTCTATTTGACAGAGTTTGCTAATGAGAATGATTATTTGAGACTGAAGCGGCTCCGTGGACGCCATTTTACGTTCGACGCTTCATTTCCTGACACCACTAATCAACAAGAAGTTTATTCCACCACGACAGCAGAGCTTGTAGAAGCAGTTCTGCAGGGAAGGAATGGTTCTGTCTTCTGCTATGGAGCCACTGGGGCTGGCAAGACCTACACAATGCTAGGAACGGTTGAGAACCCTGGAGTAATGGTTTTGGCTATCAAAGATCTCTTCACCAAGATTAGGCAGAGGAGCTGCGATGGGAACCATACAGTCCACCTCTCTTACATTGAGGTCTACAATGAAACAGTCAGAGATTTGTTGTCCCCAGGAAGGCCATTAGTCCTCAGAGAAGACAAGCAGGGCATTGTTGCTGCTGGTCTTACACAATACAGAGCTTACTCCACGGATGAAGTGATGGCCTTGCTTCAGCGAGGAAATCAAAACCGAACTACTGAACCGACCCGTGTTAATGAAACTTCTTCACGTTCCCATGCTATACTGCAGGTTACAGTTGAGTATCGAGCCAGAGATGGTGCAATGAACGTCGTAAATAGAGTAGGAAAGCTTTCATTGATTGATCTTGCTGGGTCAGAGAGAGCACTTGCCACAGATCAGAGAACATTAAGATCTCTTGAGGGAGCAAACATAAACAGATCACTACTTGCTCTAAGTAGTTGCATCAATGCCCTTGTGGAAGGAAAGAAGCACATTCCTTACAGGAATTCAAAACTTACCCAACTTCTAAAGGACTCGTTAGGAGGAGCTTGTAACACTGTGATGATTGCAAATATCAGCCCAAGCAACCTATCATTTGGTGAAACTCAAAATACACTTCACTGGGCTGATCGTGCTAAAGAGATCAGAACTAAGGTTGCAGAAGCAAACGAGGAAATAATGAAGGCACCTGAATCTGAATCGGACCAGGCGAAACTACTGCTTGAATTGCAGAAAGAAAATCGTGAACTACGTGTGCAGTTGGCTCGTCAGCAACAGAAGTTACTTACATTACAGGCACAATCCCTGGCTGCAGTTGCTTCTCCAACCCCATCTTCAGCCACATCTCTTCTAACTCCCCCAACGTCTGTTCACCAAAATGAGAAACGAAAACCGAGAACATCCTTCTTGAATGGGAACTGTTTCACACCAGAATCTAGAAGGAAGGGTGCAGAGGAAGGAGTTAGAGAGCTTCGCCGCACGGTGAAACAATTAGAAGCCGAGCTTGAGAAGACAAAGAAAGAGCACGTTGTGCAGTTGAAGCAAAAAGATGATCTTATCAGTGAGCTCTTGAAGAAAAGTGAAAAAACAGCAGGATTGGTGAGAGGAGAAGGGGTAAAGAGGGCAGAAACAAGAACCAGCGTAAGACCAAAGGAGCCAACCGTTGGTGAACTGAAGAGCCCAAGCCACCGCTTCAAATCACCAGCTCCAACAGCTAAAAAACGAAGCTTTTGGGACATAACAACAACTAATAGCCCATCTGTTGCCACATTAAATGGAAGGAAGACCAGAAGTCATGTACTTGCAGAGCCTCCTTCTACTGCTGCTCCCTCTATGCTTCGTCAGCCAGGTTTTGCTCGACAGAAGCCATAG 2277 45.1 MPVSTRSQIMNDGQIDSIPGQEDKQQLNLPPRNLHHGLKEKMKALTLLYEQQKLASAALKRPSPKGEDLRFTTHPSVELNGSCKKEEKEPKLENVMRENAMPNSTVTRTYVLPQPPMADAKENVVVGSDRIVGFSCSKKASLSTNVARKLSLGNSMPVVEMKEKCKKLQEMEESGSFSEKESLGESRILVFVRLRPMAKKEKDAGSRSCVKIVNRRDLYLTEFANENDYLRLKRLRGRHFTFDASFPDTTNQQEVYSTTTAELVEAVLQGRNGSVFCYGATGAGKTYTMLGTVENPGVMVLAIKDLFTKIRQRSCDGNHTVHLSYIEVYNETVRDLLSPGRPLVLREDKQGIVAAGLTQYRAYSTDEVMALLQRGNQNRTTEPTRVNETSSRSHAILQVTVEYRARDGAMNVVNRVGKLSLIDLAGSERALATDQRTLRSLEGANINRSLLALSSCINALVEGKKHIPYRNSKLTQLLKDSLGGACNTVMIANISPSNLSFGETQNTLHWADRAKEIRTKVAEANEEIMKAPESESDQAKLLLELQKENRELRVQLARQQQKLLTLQAQSLAAVASPTPSSATSLLTPPTSVHQNEKRKPRTSFLNGNCFTPESRRKGAEEGVRELRRTVKQLEAELEKTKKEHVVQLKQKDDLISELLKKSEKTAGLVRGEGVKRAETRTSVRPKEPTVGELKSPSHRFKSPAPTAKKRSFWDITTTNSPSVATLNGRKTRSHVLAEPPSTAAPSMLRQPGFARQKP 758
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24628738 24633549 + MELO3C017278.2.1 Cme02g01775 321664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01775 758 MobiDBLite consensus disorder prediction 578 623 - -
Cme02g01775 758 SMART kinesin_4 185 525 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 PRINTS Kinesin heavy chain signature 270 291 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 PRINTS Kinesin heavy chain signature 384 401 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 PRINTS Kinesin heavy chain signature 418 436 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 PRINTS Kinesin heavy chain signature 467 488 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 Gene3D Kinesin motor domain 179 523 IPR036961 -
Cme02g01775 758 MobiDBLite consensus disorder prediction 578 593 - -
Cme02g01775 758 MobiDBLite consensus disorder prediction 1 28 - -
Cme02g01775 758 Pfam Kinesin motor domain 193 517 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 MobiDBLite consensus disorder prediction 711 729 - -
Cme02g01775 758 PANTHER CENTROMERE PROTEIN E 152 757 - -
Cme02g01775 758 ProSitePatterns Kinesin motor domain signature. 417 428 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cme02g01775 758 ProSiteProfiles Kinesin motor domain profile. 187 517 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cme02g01775 758 Coils Coil 616 650 - -
Cme02g01775 758 MobiDBLite consensus disorder prediction 670 758 - -
Cme02g01775 758 MobiDBLite consensus disorder prediction 670 694 - -
Cme02g01775 758 Coils Coil 542 569 - -
Cme02g01775 758 PANTHER KINESIN-LIKE PROTEIN 152 757 - -
Cme02g01775 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 562 IPR027417 -
Cme02g01775 758 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01775 K10401 KIF18_19; kinesin family member 18/19 - csv:101222937 1410.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01775 Cme-Chr2:24628738 Cme08g00695 Cme-Chr8:4606019 4.25E-86 dispersed
Cme09g01562 Cme-Chr9:20594822 Cme02g01775 Cme-Chr2:24628738 2.66E-33 dispersed
Cme02g01775 Cme-Chr2:24628738 Cme11g00163 Cme-Chr11:1744215 3.65E-56 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007142 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01775 Cme_Chr02 FPKM 0.0 0.0 1.947789 2.349609 27.431402 34.123154 33.034821 3.406643 3.624091 2.635378