Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01777 ATGCATATATCAACAATGCCCTTCCTCCACCACACCACCACCTCCTTCGCCTCCTACCATTCCGATCGTCTCCAATCCCTGGGATCGCCGTCGTCATTTTCCGGTTTTGTCTATTCCGTTATTTTATTCCTTTCTCGGACGCCTTTCGGTATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCAAAGGCGACTATGACCAAGATTATCAAAGAGATGTTGCCCCCTGATGTACGGGTTGCAAGAGACGCTCAAGATCTTCTGATTGAGTGTTGTGTGGAGTTTATAAACCTTGTATCATCAGAGTCTAATGAAGTTTGTAGCAAAGAAGAAAAAAGAACAATTGCACCTGAACACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAATACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGATCGAAACTATGAAACTTCTGCAGCAAGACTCATTGAAAGGAGGAAAGTGGAGTAATGGAGCTGAGATGACCGAAGAAGAAGCTTTGGCTGAGCAACAAAGAATGTTTGCCGAGGCACGTGCAAGAATGAACGGCAGTAATACTGCACCGAAGCAACCGGAGCCTGAGCAAAGTTTAGAGAGCTAA 633 45.5 MHISTMPFLHHTTTSFASYHSDRLQSLGSPSSFSGFVYSVILFLSRTPFGMEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEEKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRIETMKLLQQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQPEPEQSLES 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24637859 24641616 - MELO3C017276.2.1 Cme02g01777 321666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01777 210 MobiDBLite consensus disorder prediction 187 210 - -
Cme02g01777 210 MobiDBLite consensus disorder prediction 194 210 - -
Cme02g01777 210 PANTHER PROTEIN DR1 HOMOLOG 51 209 IPR044255 -
Cme02g01777 210 Gene3D Histone, subunit A 54 199 IPR009072 GO:0046982
Cme02g01777 210 SUPERFAMILY Histone-fold 62 196 IPR009072 GO:0046982
Cme02g01777 210 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 64 129 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01777 Cme-Chr2:24637859 Cme06g02771 Cme-Chr6:34982615 6.14E-17 dispersed
Cme02g01777 Cme-Chr2:24637859 Cme10g00818 Cme-Chr10:5367123 1.09E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40926 PF00808 CBFD_NFYB_HMF 5.10E-22 CL0012 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01777 K21751 - csv:101214627 298.13