Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01780 ATGGAATCGGACGAAGAAGATTTCGTTTTCTATGGAACTCCAATTGAGCGGGAGGAAGAGATCAACAGCCGTAAAAGGAAATCTGTGGCTGACGCTTCGGGTACCATGCGAACCCTCCCTCACTGGAAACAAGAGGTTAGAGACGAGGAAGGGCGCAGAAGATTTCATGGGGCATTCACTGGAGGATTTTCTGCTGGCCATTACAATACAGTGGGCTCGAAAGAAGGTTGGACTCCACAGTCGTTTACATCGTCCCGAAAGAATCGAGCTGAAGTCAAGCAGCAAGACATTTTAAACTTCTTAGACGAAGATGAAAAAGCTGAATTGGAAGGCCGAGGCCTGGGGACATCTTCTCAGTTTGATACATTTGGTTTCACAGCAGTAGAGCTTGCTCGTAAGCAAGCCGACAAGGAGCAACAACAGAGGCCGTCTGCTATTCCTGGACCTGTTCCTGATGAATTAATTGTTCCAGCTGCAGAATCCATAGATGCTCGAAGAGATGCACGAAAAGCATTTCTAAGATTTTCAACCGGTGATGTCAAATCGGAAATCCCTAATTCTGAACCGTTTCAGGATGATGATGATACTGTTTCTCAACCTGCCAAGGGTGATGTTTCGTCTTCTCAAAGCACACCTGTTTATGTGATCAACCCAAAACAGGATTTGCATGGTTTAGGTTTTGATCCTTACAAGCATGCACCAGAGTTTATGGAAATGAAAAGAGCGCGCACAGCTGGGAATCAGGAAGCTGAGAGGATTGCTTCTGGCTTTGGCATTGGTGCGCTTGAAGAACTTGATGTTGAAGATGAGGATGTTTATACCTCTGGTTATGAGTTCGAGGAAACATATGTACAAGAAGAGGATGAGCCTCCTTCTAAGATGATTACAGATGGAAAACAAAAGTTGATTGGAAGAAAAGTTGAGGGTGTCTTGCTTGGATTTAGAATTGCTTCGAAATCTGACTACCAGATGGAAAGGTTTGATCCTCCTGTAATACCTAAGGACTTTATACCCCACCACAAATTTGCAGGGCCTCTCATTGGTGGCTATAAGCTTGCTGACACCCCTCCTGTTGAGGTTCCCCCTCCTGAGGATAATAATCTGAAACTTCTAATTGAAGGGGTGGCAACTTTGGTTGCTCGCTGTGGAAAACTATTTGAGGATCTCTCTAGAGAAAAAAATAAGTCAAATCCATTATTTAGTTTTCTTAATGGAGGAACTGGCCAGGAATATTATTCAAGGAAGCTATGGGAGGAGCAACTGAAGCACGTGGACCAACCTAAGCCTCAATTTGATGATAAATTGTCCCCAAGCCTGGAGAGGATGACAGCCGAAAGTCGTGGAAAAATCCTTGGTGAAAAGCCTTTGGCAAGAAGCGCTAAAGAGTTAAATCCACCTGCAGCTTCTGATGGCGTGCATGTCCAATACAATCTTTCGGATACATTTACTAAACCTACATCATCGGGTGGGATGCCAGAGGTTGTCAAACCTTTCAAGGATGATCCAGCTAAGCAAGAAAGATTTGAGCAGTTTTTAAAGGAAAAGTATCAAGGAGGCCTGCGCACTGGTGCTCCTGTTGGAGCTATTAATATGTCAGAAGCAGCTCGTGCGCGTGAACGTTTGGACTTTGAGGCTGCTGCAGAGGCGATTGAGAAAGGGAAAGGGTTGAAAGAAGCTAAGCTCTCTGCTGAGCACTTTGTGGATTTTTTAGCCACTGGAGGAATGCAGTTTACCTCTGGTGGTGTAGAGGAAGTCAAAGATACAAAGCTAGAAGGTTTAATGATGGAGAAAATGTTCCCTAAACGGGAAGAATATCAGTGGCGCCCTGCTCCTATTCTGTGCAAGCGGTTTGATCTCATTGATCCCTACATGGGGAAGCCACCACCAGCACCTAGAATGAGGAGCAAGTTGGATACACTTATTTTCACATCAAATTCTGTCAAATCAACAAAGGTTGAAGAATCTTTAACCTCAACCCCTTCTTCATTACCTCAATCAAATGCCGAAGAAAAAGACACGGATGGATCTGAAAATGTAAATGAGAAAGTAGAAGTTGAATGCGTTGATCGGCCTGTTGATCTATATAAGGCTATTTTCTCTGATGAATCGGATGATGAAGAGAGTACATCAACTCTCAAGCAAGCCGAGGATCCTAACAAGAAAGTTGAAGTGGCTAATACAACACTTAACCGTTTGATTGCGGGTGACTTTCTGGAATCTTTGGGTAAAGAACTGGGCTTGGAAGTGCCCTCAGATCTACCTCCATCAAAGAAAGGTCAAACCGCAGCTCCTCAGAATGAAGCTGTACCTGTTGGTGAACAGAATGTCAATATCCTTTCAGTTGAAGATAAGCCTTATCCCACCCCATCAACCACTGGGATTCTATCGGACCATCGAATGACAGGCTTTGCAGGACATGACCTAAATAGCAGAAAAGAAGACAATAAACTCGATCATAACTCAGCTGGAAGTGGTAGTAAAATTATGGAATCCACCTCTTCCAAGAAAACTTCAGGTAAAGTTTATGAAGAAGAGATGTACAAGGACAAGGGGGATAGGAAGGCTAACAACAGGCGAGTTGACATTCATCGTGATTGTAGCGGCAGCTCATCATCGGAAGATGAAAAGAGAAGAAAACGTTCAAGGAGGCGTAGATATAAAAGTAGTGACTCAGAGGATAGTGCATCAAGTGATGATTATCATACGAAAGAGCACTCTAAATCACGAGATAGAAAAAAAGGATCTTCTCAAGGAAAGAAGAGCCAAAGAAAACACTCGAAACATCACAAGCACAGACATAGAGATTCTTCCCCCAGAGACCATCATCGGTCGAGAAAAGATCGTACAGTTCTTTCTGGAATCTACAAGCACAGTTCGGGATCGGCTGAAGCGCAAACAAATGGTTGGGTCTCCAACACCTCAAAATTGTAA 2931 43.74 MESDEEDFVFYGTPIEREEEINSRKRKSVADASGTMRTLPHWKQEVRDEEGRRRFHGAFTGGFSAGHYNTVGSKEGWTPQSFTSSRKNRAEVKQQDILNFLDEDEKAELEGRGLGTSSQFDTFGFTAVELARKQADKEQQQRPSAIPGPVPDELIVPAAESIDARRDARKAFLRFSTGDVKSEIPNSEPFQDDDDTVSQPAKGDVSSSQSTPVYVINPKQDLHGLGFDPYKHAPEFMEMKRARTAGNQEAERIASGFGIGALEELDVEDEDVYTSGYEFEETYVQEEDEPPSKMITDGKQKLIGRKVEGVLLGFRIASKSDYQMERFDPPVIPKDFIPHHKFAGPLIGGYKLADTPPVEVPPPEDNNLKLLIEGVATLVARCGKLFEDLSREKNKSNPLFSFLNGGTGQEYYSRKLWEEQLKHVDQPKPQFDDKLSPSLERMTAESRGKILGEKPLARSAKELNPPAASDGVHVQYNLSDTFTKPTSSGGMPEVVKPFKDDPAKQERFEQFLKEKYQGGLRTGAPVGAINMSEAARARERLDFEAAAEAIEKGKGLKEAKLSAEHFVDFLATGGMQFTSGGVEEVKDTKLEGLMMEKMFPKREEYQWRPAPILCKRFDLIDPYMGKPPPAPRMRSKLDTLIFTSNSVKSTKVEESLTSTPSSLPQSNAEEKDTDGSENVNEKVEVECVDRPVDLYKAIFSDESDDEESTSTLKQAEDPNKKVEVANTTLNRLIAGDFLESLGKELGLEVPSDLPPSKKGQTAAPQNEAVPVGEQNVNILSVEDKPYPTPSTTGILSDHRMTGFAGHDLNSRKEDNKLDHNSAGSGSKIMESTSSKKTSGKVYEEEMYKDKGDRKANNRRVDIHRDCSGSSSSEDEKRRKRSRRRRYKSSDSEDSASSDDYHTKEHSKSRDRKKGSSQGKKSQRKHSKHHKHRHRDSSPRDHHRSRKDRTVLSGIYKHSSGSAEAQTNGWVSNTSKL 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24645010 24655583 + MELO3C017274.2.1 Cme02g01780 321669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01780 976 MobiDBLite consensus disorder prediction 804 820 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 65 89 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 758 773 - -
Cme02g01780 976 SMART surpneu2 369 421 IPR000061 GO:0003723|GO:0006396
Cme02g01780 976 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 940 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 180 211 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 886 911 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 821 836 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 748 976 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 132 154 - -
Cme02g01780 976 Pfam Surp module 371 418 IPR000061 GO:0003723|GO:0006396
Cme02g01780 976 SUPERFAMILY Surp module (SWAP domain) 351 421 IPR035967 GO:0003723|GO:0006396
Cme02g01780 976 MobiDBLite consensus disorder prediction 912 939 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 22 50 - -
Cme02g01780 976 ProSiteProfiles SURP motif repeat profile. 371 415 IPR000061 GO:0003723|GO:0006396
Cme02g01780 976 MobiDBLite consensus disorder prediction 837 877 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 652 679 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 652 669 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 699 718 - -
Cme02g01780 976 Gene3D Surp module 350 423 IPR035967 GO:0003723|GO:0006396
Cme02g01780 976 PANTHER G PATCH DOMAIN-CONTAINING PROTEIN 1 1 940 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 954 976 - -
Cme02g01780 976 MobiDBLite consensus disorder prediction 71 88 - -
Cme02g01780 976 Pfam Protein of unknown function (DUF1604) 39 119 IPR011666 GO:0006397
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01780 K13123 GPATCH1; G patch domain-containing protein 1 - csv:101222702 1623.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01780 Cme-Chr2:24645010 Cme10g01436 Cme-Chr10:17401694 2.73E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g386 . . . Bda15g00649 Bpe12g00504 . . . . . . . . . Sed12g2048 . . Bhi02g00020 Tan09g1963 Cmetu02g0079 . . . . Cla06g01499 Cam06g1652 Cec06g1712 Cco06g1710 Clacu06g1618 Cmu06g1567 Cre06g2379 . . Cone13ag0009 Cone19ag0008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00349 . Cme02g01780
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009521 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01780 Cme_Chr02 FPKM 0.417415 1.044077 0.0 0.0 3.644516 4.337072 3.570353 0.539796 0.0 0.272581