Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01791 ATGCCGACCGTAAGCGTCGGAAGAGATCTTCTTTTTGCTGCCATTGGAAGAAGTTACACGCAGGAAGAGTTTGAAGAGCTATGCTTTAGGTTTGGAATTGAGCTTGATGACGTTACGACGGAGAAGGCGATTATTAGGAAAGAGAAGCATTTGGAAGAAGAAGCGGATGAAGATGAAGAAGTCATCTACAAGATTGAAGTCCCCGCGAATAGGCATCTGGGACATAACCGATACGATTTGCTATGTCTGGAAGGGCTGGCACAAGCACTGCGCATTTTTAATGAGCAGGAGGACACACCCAGATATACATTAGCCAATATCAGCAAAGAATCTATGCATAAAATGCATGTAAAACCGGAGACTTCCATGATCCGTCCTTTCATCGTTTGTGCTGTTTTGAGAGACATGACTTTTGATGAAGCAATTTATGATAGTTTTATTGATTTGCAAGAGAAACTTCATCAGAACATATGTCGACGGAGAAGTCTCGTCGCCATTGGAACTCACGACCTGGATACACTTGAAGGCCCCTTCACCTATGAGGCTTTGCCACCTACAGCTATAAACTTTGTGCCTCTGAAACAGACAAAGAATTTCAGAGCCGATGATCTAATGGAGTTCTATAAATCAGATTTGAAGCTGAGGAAGTACGTGCCCATAATAGAAAAGTCACCTGTATATCCCATTTTGTATGACCGCAACAGAACTGTTTTGTCTTTGCCACCAATTATCAATAGTGCACATTCAGCTATTACTTTGAAGACAAAGAATGTGTTTATTGAATGCACCGCGACTGATCTGACAAAGGCAAATATTGTCTTGAATACCATGGTAACTATGTTTTCAACGCTGTGCAAAAAGAAGTTTGAAATTGAACCAGTTGAAGTGATATATCCGGATGGCAGGTCGTGTATTTATCCAGAAATATCTCTCTACAATATGGAAGTTTCTCTGTCTTATATCAATAAATGTATTGGAGTCTCATTGGAGACAGAAGAGGTTATCAGTTTGTTAAATAGGATGCAATTGCACGCTGAACAGTCAGCATCTGGTGACAAATCTAGTCTAACTATATCTGTGCCCCCAACAAGGAGTGATGTGCTACACCCATGTGATGTCATGGAGGATGTTGCTATTGCTTATGGGTATAATAATATCCCGAAGAGTAAACCAGCATCTTTGCAGCCTCTAACATTAAATGAGTTCAGTGACCTTATTAGAGGAGAGATTGCAATGAGTGGGTTCACGGAGGTACTTACGTGGATTCTATGTTCTTATAAAGAGAACTTTGCCATGTTAAAGCGTGAAGATGATAAATCTACTGCAGTTGTCATTGGAAATCCTCGTTCAACTGATTTTGAGGTTGTCCGAACCAGTCTTATGCCTGGTCTTTTGAAAATTGTTGGACATAATAAGGATCACCCAAAGCCCATAAAGATATTTGAAGTTGGTGATGTATCATTGCTGGATGATTCAAAAGATGTTGGCGCTAGAAATCATCGTTATCTTGCTGCTCTATATTGCGGTGCCAATTCTGGATTCGAAGTAAGAATCTAA 1557 40.4 MPTVSVGRDLLFAAIGRSYTQEEFEELCFRFGIELDDVTTEKAIIRKEKHLEEEADEDEEVIYKIEVPANRHLGHNRYDLLCLEGLAQALRIFNEQEDTPRYTLANISKESMHKMHVKPETSMIRPFIVCAVLRDMTFDEAIYDSFIDLQEKLHQNICRRRSLVAIGTHDLDTLEGPFTYEALPPTAINFVPLKQTKNFRADDLMEFYKSDLKLRKYVPIIEKSPVYPILYDRNRTVLSLPPIINSAHSAITLKTKNVFIECTATDLTKANIVLNTMVTMFSTLCKKKFEIEPVEVIYPDGRSCIYPEISLYNMEVSLSYINKCIGVSLETEEVISLLNRMQLHAEQSASGDKSSLTISVPPTRSDVLHPCDVMEDVAIAYGYNNIPKSKPASLQPLTLNEFSDLIRGEIAMSGFTEVLTWILCSYKENFAMLKREDDKSTAVVIGNPRSTDFEVVRTSLMPGLLKIVGHNKDHPKPIKIFEVGDVSLLDDSKDVGARNHRYLAALYCGANSGFEVRI 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24710026 24716856 - MELO3C017266.2.1 Cme02g01791 321680

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01791 518 Pfam tRNA synthetase B5 domain 314 383 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cme02g01791 518 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 95 IPR040659 -
Cme02g01791 518 SMART B3_4_2 124 286 IPR005146 GO:0003723|GO:0004826
Cme02g01791 518 Pfam B3/4 domain 129 286 IPR005146 GO:0003723|GO:0004826
Cme02g01791 518 SUPERFAMILY Putative DNA-binding domain 5 97 IPR009061 -
Cme02g01791 518 SMART B5_2 311 383 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cme02g01791 518 Gene3D - 312 386 - -
Cme02g01791 518 SUPERFAMILY Class II aaRS and biotin synthetases 380 515 IPR045864 -
Cme02g01791 518 ProSiteProfiles B5 domain profile. 309 388 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Cme02g01791 518 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 516 - -
Cme02g01791 518 Gene3D - 1 95 - -
Cme02g01791 518 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 516 IPR045060 GO:0004826|GO:0006432
Cme02g01791 518 Gene3D - 105 310 IPR020825 -
Cme02g01791 518 SUPERFAMILY Putative DNA-binding domain 313 387 IPR009061 -
Cme02g01791 518 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 1 513 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Cme02g01791 518 Gene3D Bira Bifunctional Protein; Domain 2 397 516 IPR045864 -
Cme02g01791 518 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 386 511 IPR041616 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01791 K01890 FARSB, pheT; phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] - csv:101210257 983.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01791 Cme-Chr2:24710026 Cme02g01818 Cme-Chr2:24928038 8.49E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g401 . . Bda06g00500 . . . . Bma12g00949 . . Cma10g00267 . Car10g00251 . . . . Bhi02g00039 . . . . . . Cla06g01510 Cam06g1665 Cec06g1726 Cco06g1722 Clacu06g1631 Cmu06g1580 Cre06g2390 . . . Cone19ag0020 . . . . . Blo15g00353 . . . . . . . Cmo10g00286 . . . . . . Cpe18g00729 . . . . . . . . . . . . . . Lsi06g01373 Csa01g00315 Chy02g02425 Cme02g01791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005974 1 2 1 1 0 1 2 1 1 1 1 1 2 2 1 2 1 1 2 1 1 1 1 2 2 2 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01791 Cme_Chr02 FPKM 16.140844 15.410231 12.07956 15.644948 25.946724 21.330942 20.859371 16.392159 12.236762 12.98639