Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01792 ATGGCTCAAGATACGTCTCCTAGCATTGAATCACCTCGGAAGCGTTCTGGCCTTTTGCGAGATCAAGTTCAGTTAGTTAAGAAGAAGGACTCAAATCGATATGAGATCCTTCCGATTCAGGATCCTCTTTCATTTGAGAAAGGTTTTTTCATTGTAATACGTGCGTGCCAGTTGTTGTCTCAAAAGAACGATGGGATAATTCTAGTAGGAGTGGCAGGGCCCTCTGGAGCTGGGAAGACTGTATTTACTGAGAAGGTGCTTAACTTTATTCCCAGCATTGCTGTTATCACGATGGATAACTACAATGATTCCAGTCGTATCATCGATGGCAATTTTGATGCTAGTATGCTTGTCAATTACTTCTTGCTATTCAAGTCACTGGAATCTCTGATGACCTTTTTTACATCAGACCCACGTCTAACGGATTATGATACATTGCTGGAAAATATTAATGGTTTAAGAGAAGGAAAATCTGTCCAAGTTCCTATTTATGACTTCAAGACAAGTAGTCGCGTGGGCTACAGGATTCTTGAAGTTCCCGAGTCACGGATTGTCATTATTGAGGGCATCTATGCTTTAAGTGAAAAATTACGTCCGTTGTTAGATCTTCGTGTATCGGTCACTGGTGGTGTTCATTTTGACTTAGTGAAAAGGGTATTACGAGATATTCAACGAGCTGGCCAAGAGCCAGAAGAAATAATACATCAAGTTTCTGAAACGGTTTATCCAATGTATAAAGCTTTTATTGAGCCAGATCTTCAGACCGCCCATATAAGAATTATTAACAAATTCAATCCCTTTACTGGTTTCCAGAATCCTACTTACATTCTTAAGTCAACGAAAGCAGTAGCTGTGGATCAAATTAAGGCTGTTATATCTGAAAATCACAAGGAGTCTACTGAGGAAACTTATGACATTTATCTTCTACCTCCTGGTGAAGATCCTGAAGTGTGTCAATCCTATCTGAGGATGAGGAATAGGGATGGAAAATACAATCTCATGTTTGAGGAGTGGGTTACAGATATTCCATTCATAATTTCACCTAGAATAACTTTCGAAGTTAGTGTGCGCCTTCTTGGAGGGCTTATGGCACTTGGATACACAATTGCAACTATACTTAAAAGAAGCAGCCACATATTCTCTGATGATAAGGTGTGTATAAAGATCGATTGGTTGGAGCAACTTAACCGAAAATACATTCAGGTGCAAGGAAAAGATCGGGTGCATGTTAAATGCGTTGCTGAGCAGTTGGGTTTGGATGGTTCCTATATCCCTCGAACTTATATTGAACAGATACAGTTAGAGAAGCTTGTTAATGATGTTATGGCCTTGCCAGATGATTTAAAAACCAAACTCAGCATAGACGATGAGTCACTTTCAAGTCCAAAGGAGGCACTTTCCCGAGCTTCTGCAGATAGGAGAAATAAGTACCTTAACCGTGGCTTATCACAATCATTTTCAAATCGGAGGGACAAGACCTTGTCAAAGCTTACAAAGCTTGCTGTTAATAATAGGAGATTTGATGTGAGGGCTCCAGATTCCCCTGCAGTAGTCTCTAACCAGGGAGCTATTACTCAACTTTCAGAACAAATTTCTACCCTCAGTGAGAGAATGGATGAATTCACAACTCGAATTGAAGAGCTGAACTCCAAGATATGTACCAGAAAAGTTTCTGCTAGTCAGCAAAACTTGGTTTCACAATCCGATGCGTGTAACAACGGCTCTGGGGCAACTTCAATTTTCATATCCGGCTTGAGCAATGGTGCCTTAACCGGATCGCTACTCCCTCATTCTTCATCGTCCTCCCAATTAGCCAAGGAGTCTCCCTTGCTAGAAGAGATACAAAACATACAACGAGCGCAACGTCAGATTATTCTCCAAGTTGACAATTTGAGCAATCTTCTCCGAGAGCACTCGAGTGAAAGGAGTCGTCGGGAAAAAGATGAGGGGAGGTGGAGGATTACTGATCTTGGATCCATCAGCACCCCAGTTTTGCTAACACTTGCAATTGGTAGTTCTGCTGCAAAGTATTGTGTGTAG 2040 41.23 MAQDTSPSIESPRKRSGLLRDQVQLVKKKDSNRYEILPIQDPLSFEKGFFIVIRACQLLSQKNDGIILVGVAGPSGAGKTVFTEKVLNFIPSIAVITMDNYNDSSRIIDGNFDASMLVNYFLLFKSLESLMTFFTSDPRLTDYDTLLENINGLREGKSVQVPIYDFKTSSRVGYRILEVPESRIVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQVSETVYPMYKAFIEPDLQTAHIRIINKFNPFTGFQNPTYILKSTKAVAVDQIKAVISENHKESTEETYDIYLLPPGEDPEVCQSYLRMRNRDGKYNLMFEEWVTDIPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFSDDKVCIKIDWLEQLNRKYIQVQGKDRVHVKCVAEQLGLDGSYIPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDESLSSPKEALSRASADRRNKYLNRGLSQSFSNRRDKTLSKLTKLAVNNRRFDVRAPDSPAVVSNQGAITQLSEQISTLSERMDEFTTRIEELNSKICTRKVSASQQNLVSQSDACNNGSGATSIFISGLSNGALTGSLLPHSSSSSQLAKESPLLEEIQNIQRAQRQIILQVDNLSNLLREHSSERSRREKDEGRWRITDLGSISTPVLLTLAIGSSAAKYCV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24718314 24724864 - MELO3C017265.2.1 Cme02g01792 321681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01792 679 SUPERFAMILY CYTH-like phosphatases 285 431 IPR033469 -
Cme02g01792 679 Pfam CYTH domain 293 428 IPR023577 -
Cme02g01792 679 PANTHER URIDINE KINASE 7 671 - -
Cme02g01792 679 CDD UMPK_like 68 263 - -
Cme02g01792 679 Gene3D - 67 269 IPR027417 -
Cme02g01792 679 Gene3D - 278 437 - -
Cme02g01792 679 Coils Coil 617 637 - -
Cme02g01792 679 Coils Coil 524 551 - -
Cme02g01792 679 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 260 IPR027417 -
Cme02g01792 679 PANTHER URIDINE-CYTIDINE KINASE C-LIKE ISOFORM X1 7 671 - -
Cme02g01792 679 ProSiteProfiles CYTH domain profile. 272 434 IPR023577 -
Cme02g01792 679 Pfam Phosphoribulokinase / Uridine kinase family 69 260 IPR006083 GO:0005524|GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01792 K00876 udk, UCK; uridine kinase [EC:2.7.1.48] - csv:101210506 1183.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01792 Cme-Chr2:24718314 Cme06g01664 Cme-Chr6:18167668 4.56E-12 dispersed
Cme04g01471 Cme-Chr4:21034667 Cme02g01792 Cme-Chr2:24718314 6.31E-13 transposed
Cme06g02430 Cme-Chr6:31380803 Cme02g01792 Cme-Chr2:24718314 4.74E-12 transposed
Cme10g01474 Cme-Chr10:18270658 Cme02g01792 Cme-Chr2:24718314 1.19E-56 transposed
Cme10g00321 Cme-Chr10:2103810 Cme02g01792 Cme-Chr2:24718314 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g403 Blo04g00806 . . . . . . . . . Cma10g00269 Cma11g00239 Car10g00252 Car11g00218 . . Cpe04g01432 Bhi02g00041 Tan09g1983 . . . . . . . . . . . . . . . Cone19ag0022 . . . . . . . Bda14g00899 . Bpe15g00559 Bma03g00874 . . Cmo10g00287 Cmo11g00243 . . . . . Cpe18g00728 . . . . . . . . . . . . . . Lsi06g01374 Csa01g00316 . Cme02g01792
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001604 2 5 3 2 2 1 4 1 1 1 1 1 4 2 2 4 1 3 4 1 2 2 3 2 2 2 2 5 4 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01792 Cme_Chr02 FPKM 1.930091 1.596507 1.261057 0.0 0.0 0.0 0.0 0.0 0.0 0.0