Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01796 ATGGCGAAGCTGCTTCTCCATCTTCAAGCTCCTCATCTCGCTTCTTCCTTCAATCGCCGAACCCTCTCATTCATAATCTCCAACTCCAATTCTTCTTCTTCTTCTTCTTCCTTACAATGCCGCTTCGCTCTCCCTCTCTCCTCCTTCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTTACGCCGCTGCTTCTCTCTTCGAGCATTCGACGACAATGCATCAGAGACCAAACGCGTTGAAAAAGAAGAAACAGACGCTTCAAACGAGGCTCCGATAAGTAGCGACGGCGTCAGGACTCGCGATGAGGATTATCCAAGTGGAGAGTTTGAGTTCCAGAAATTTGGACCGTGGAGGAGCTTTCTGGTTAAGCTTAAGATGCTGGTGGCTTTTCCTTGGGAGCGCGTCCGCAAGGGAAGTGTCTTGACTATGAAATTGCGAGGGCAGATATCTGATCAGCTAAAGAGCCGTTTCTCTTCAGGGCTTTCTCTACCTCAAATCTGCGAGAACTTTGTCAAAGCTGCATACGATCCTCGTATTTCTGGGATCTATTTGCAAATTGAGGCTCTAAATTGTGGGTGGGGTAAAGTTGAAGAAATTCGAAGGCATATCCTCAATTTCAAAAAATCTGGTAAGTTTATTGTTGCCTATATTCCTACATGTCAAGAGAAAGAGTACTACCTGGCATGTGCATGTGAGGAGATATATGCCCCGCCAAGTGCTTATGTTTCTTTGTTTGGTCTGACTGTTCAAGCTTCATTTCTCAGAGGTATTTTTGATAAAGTAGGGATTGAACCACAAGTGGAAAGGATAGGTAAATATAAAAGTGCTGGTGATCAACTAGCACGGAGAAATATGTCAGAAGAAAATTGCGAAATGTTGACGACATTGCTTGATAACATCTATGGCAACTGGCTGGATAAAGTTTCTTCAACAAATGGAAAGAAAAAAGATGATGTTGAAAACTTCATTAATGAAGGAGTGTACCAAATTGAAAAACTAAAAGAAGATGGCTGGATCACCAACATACAGTACGAGGATGAGGTTCTCTCTATGCTAAGTGAAAGACTTGGTCTGCCGAAGGACAAAAAGGCTCCCATGGTTGATTACAGGAAGTACTCTAGAGTTAGGCAATGGACCGTTGGTTTATCAGGAGGTGGAGACCAAATAGCTGTGATCAGAGCGGGAGGAAGCATTACTCGTGTAAGAAGTCCTTTAAGTGTTCCTAGCTCTGGTATCATTGGGGAGCAATTCATTGAGAAGATTCGAACTGTTAGAGAGTCAAAAAGATTCAAGGCTGCCATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTGGCTTCTGATTTGATGTGGAGAGAAATCAGACTTCTGGCTGCATCAAAACCTGTTGTTGCATCCATGGCTGATGTGGCTGCCAGTGGAGGATACTATATGGCAATGGCAGCTGGGACAATTGTTGCCGAAGAACTAACCTTAACCGGGAAGTTTAACTTGGGGAAACTATATGAAAAGATTGGCTTTAACAAGGAAATCATTTCAAGGGGAAGGTTTGCTGAGCTTCTTGCGGCTGAACAACGACCTTTCAGACCGGATGAAGCAGAACTCTTTGCCAAATCTGCACAAAATGCGTACAAGCAATTTCGGGACAAAGCAGCCTTTTCCAGATCTATGACTGTGGATGAGATGGAGAAAGTTGCACAAGGGAGGGTTTGGACTGGTAAAGATGCAGCATCCCGTGGTTTAGTGGATGCTATTGGTGGCTTTTCTCGGGCTGTTGCAATAGCAAAACTAAAAGCCAACATTCCTCAAGACAGCCAGGTTAATCTTGTGGAATTATCACGACCGTCACCAACTCTACCGGAGATAATAAGCGGAGTAGGGAGTACAATTATTGGAGTTGATAGGACAATGAAGGATCTGCTCCAAGACGTTGCTTTGGGAGAAGGAGTTCAAGCTCGTATGGAAGGTATTATGCTGCAGAGAATGGAGGGATTTTCTTATGGCAATCCCATACTTAATTTCATAAAAGATTACTTCACTTCCCTCTAA 2049 43.78 MAKLLLHLQAPHLASSFNRRTLSFIISNSNSSSSSSSLQCRFALPLSSFSSSSSSSSSSLRRCFSLRAFDDNASETKRVEKEETDASNEAPISSDGVRTRDEDYPSGEFEFQKFGPWRSFLVKLKMLVAFPWERVRKGSVLTMKLRGQISDQLKSRFSSGLSLPQICENFVKAAYDPRISGIYLQIEALNCGWGKVEEIRRHILNFKKSGKFIVAYIPTCQEKEYYLACACEEIYAPPSAYVSLFGLTVQASFLRGIFDKVGIEPQVERIGKYKSAGDQLARRNMSEENCEMLTTLLDNIYGNWLDKVSSTNGKKKDDVENFINEGVYQIEKLKEDGWITNIQYEDEVLSMLSERLGLPKDKKAPMVDYRKYSRVRQWTVGLSGGGDQIAVIRAGGSITRVRSPLSVPSSGIIGEQFIEKIRTVRESKRFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVVASMADVAASGGYYMAMAAGTIVAEELTLTGKFNLGKLYEKIGFNKEIISRGRFAELLAAEQRPFRPDEAELFAKSAQNAYKQFRDKAAFSRSMTVDEMEKVAQGRVWTGKDAASRGLVDAIGGFSRAVAIAKLKANIPQDSQVNLVELSRPSPTLPEIISGVGSTIIGVDRTMKDLLQDVALGEGVQARMEGIMLQRMEGFSYGNPILNFIKDYFTSL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24749587 24757926 + MELO3C017261.2.1 Cme02g01796 321685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01796 682 SUPERFAMILY ClpP/crotonase 127 345 IPR029045 -
Cme02g01796 682 Gene3D - 138 374 - -
Cme02g01796 682 CDD S49_SppA_67K_type 141 354 - -
Cme02g01796 682 Gene3D - 495 557 - -
Cme02g01796 682 Pfam Peptidase family S49 457 600 IPR002142 GO:0006508|GO:0008233
Cme02g01796 682 Pfam Peptidase family S49 206 355 IPR002142 GO:0006508|GO:0008233
Cme02g01796 682 CDD S49_Sppa_N_C 388 596 IPR002142 GO:0006508|GO:0008233
Cme02g01796 682 MobiDBLite consensus disorder prediction 75 101 - -
Cme02g01796 682 Gene3D - 384 610 - -
Cme02g01796 682 PIRSF Protease_4_SppA 84 682 IPR004634 GO:0006465|GO:0008233|GO:0016021
Cme02g01796 682 PANTHER PROTEASE 4 29 681 - -
Cme02g01796 682 SUPERFAMILY ClpP/crotonase 377 587 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01796 K04773 sppA; protease IV [EC:3.4.21.-] - csv:101211243 1250.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g408 . . . . . . . . . . . Cma11g00235 . Car11g00212 Sed12g2036 . Cpe04g01437 Bhi02g00045 Tan09g1990 Cmetu02g0800 . Hepe09g0301 . . . . . . . . . . Cone16ag0253 . . . . . . . . . . . . . . . . Cmo11g00238 . . . . . . . . . . . . . . . . . . . . Lsi06g01380 Csa01g00322 Chy02g02419 Cme02g01796
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010220 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01796 Cme_Chr02 FPKM 17.905472 24.684916 27.596237 29.241579 10.587819 9.485047 10.619075 25.176979 23.542353 28.55125