Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01797 ATGGCTGTGGTGGCGCCGCTATTCTCCGGCCGCCACCGCTCTCCGATCATGTATAAACCAACTCCAACTCCAACTCCCACTCCCACTCCCACTCCCATATCAATTTTCAAAAATTCCCTTCTTTCAACTTCAACTCCAAAGTCTTCGTACTTCTTTGTCTCTCCTCGAACTCAAACCCATCAATCTCGATCCATCAACCCGGTTTCTCAGCTCTCACTTCTCGAAGAGATTTCCAAGCTTTGTGAAGCGGGCGATCTCAATGGAGCTCTCGATTTTCTTCAGAGAGCCTGGAAGAACAATGCTGGCTATGATTTGGCTCAGAGAAAAGAGGCCATGGGTAAGTTATTGCAGAAATGTGGGCAGTATAAAAACGTCGAAATTGGCCGGAAACTTGATGAAATGTTGTGCGTTTCCTCTCAGTTCAGCAGCGACTTTGTCCTCAATACCCGTCTCATCACTATGTACTCCATTTGTGGATATCCTTTGGAATCTCGATTGGTCTTTGATCGTTTGCAGAATAAGAATTTGTTTCAATGGAATGCACTTGTTAGTGGGTACGTTAGAAATCAACTGTACGACGAGGCAATTCACACTTTCATTGAGTTGATATCGGTAACTGAATTTCAACCTGATAATTTTACATTTCCTTGCTTGATTAAGGCTTGTACTGGGAAATGTGATGTTCATTTGGGAAAATCGGTTCATGGGATGGTGGTGAAAATGGGATTGATCATGGATTTGTTTGTGGGTAATGCGATGATTTCACTTTACGGGAAACGTGGGTTTTTAGACGAAGCCGTCGAGGTGTTTGATAAAATGCCTGAACAAAACTTGATCTCTTGGAATTCGTTGATTTGTGGGTTTTCTGAGAATGGATTTTGGCTGGAAGCTTATAGGGCGTTTAGAAGTCTTCTGGAGAGTGGCGATGGATTGACTCCGGATGTTGCTACAATGGTAACTCTGTTGCCTGTGTGTTCAGGAGAAGGAAATGTAGATATGGGAATGATGATTCATGGGATGGCAGTGAAACTGGGGCTTGTTCATGAACTAATGGTGTGTAATGCTTTGATTGACATGTACTCAAAATGTGGTTGCTTATCAGAAGCAGCGATTTTATTTTGTAAGATTGAGAACAAAAATGTAGTTTCTTGGAATTCCATGATTGGTGCATATTCTAGGGAAGGATTCGTATTTGAAACATTCGATCTGTTGAGAAAGATGTGGAAAGAAGAAAAAATGACGGAAGTAAATGAGGTCACCATTTTGAATTCGTTACCTGCTTGTTTGGAAGAAACTGAACTGTTGAGTTTGAAGGCACTTCATGGATATTCACTTAGATTTTCGTTTCAATACGAAGAATTGATAAATAATGGGTTTATAGCAGCCTATGCAAAGTGTGGATCGTTGGTTTCTGCTGAACACGTCTTCTTTGGAATGAATACGAAGTCAGTGAGCTCTTGGAATGCAATCATTGGTGAATATGCTCAAAATGGTGATCCGAGAAAAGCTTTAGACTTTTATTTTGAGATGACACGTTTGGGCATCCTTCCTGACGACTTTAGCATTGTTAGCCTACTATTGGCTTGTGGCCGTTTGGGACATCTACAATATGGCAAAGAGATACATGGATTTGTGCTAAGGAATGGGTTAGAGATGAATTCATTTGTTGCTGTCTCCTTGCTATCACTTTATTTCCATTGTTCTAAACCTTTCTACGGCAGAACTTGCTTTGAAAGGATGGAAAACAAAAACTCAGTGTGTTGGAATGCGATGCTTTCTGGTCTTTCTCAAAATGAACTTCCAAACGAAACACTCTCTTCGTTTCGTCAAATGCTTTCTGAAGGACTTGAACCTGATGAGATTACCATAGTGAGTGTTCTTGGGGCTTGCTCACAGCTATCAGCTCTTGGTCTTGGAAAAGAGGTTCATTGCTTTGTCTTAAAAAACAGTCTAATGGAAGACAATTTTGTTGCTTGTTCGCTCATGGACATGTATGCCAAAAGCGGCTTTTTGGGACATTCTCAACAAATATTTAACGGGTTAAATGACAAAGAAGTGGCTTCATGGAACGTCATGATTACAGGATTTGGTGTTCATGGACAAGGTAACAAGGCCGTGGAGCTATTTGAGGATATGCAAAGATCAAATAAGCAACCTGATCGGTTCACTTTTCTAGGAGTTCTTCAGGCATGTTGTCATGCTGGATTGGTGTCAGAGGGGATGTATTATTTAGCTCAAATGCAAACTTTGTACAAACTAGAGCCAGAACTCAAGCACTATGCCTGTGTGATTGACATGCTCGGTAGAGCAGGCCGACTAAACGAGGCATTAAACTTCATAAACGAGATGCCTGAAGAACCAGATGCTAAAATCTGGAGTTCATTGCTCAGTTCTAGTATAACTCATGTTGATCTAGAAATGGGAGAGAAATTTGGTGAAAAATTGTTAGCACTAGAAGCAAACAAAGCTGATAGCTATATTTTACTCTCTAACTTGTATGCAACAGCAGGAAAATGGGATGTTGTGCGAATGGTGAGACAGAAAATGAAGGATCTCAGTCTTCAGAAAGATGCTGGCTGCAGTTGGATTGAACTTCAAGGTAAAGTCTATAGCTTTATAGCTGGCGAAAACTCGAATTCAAGTTCAGACGAGATACGAAAGATGTGGAATAGACTGGAGAAACAGATAGTGGAAATTGGCTACACACCTGATTGTAGTTGTGTTCTTCATGAATTGGAAGAGGTGGAAAAGATAAAGATATTGAAGGGGCATAGTGAGAAGCTTGCAATTTCTTTTGGCTTCTTAAACACTAAAGAAGGCACCACATTAAGAATCTCCAAGAATCTAAGAATTTGTAGAGACTGTCACAATGCAGCAAAGTATATAAGTAAAGCTGCTAAGAGAGAAATTGTTATTAGAGACAACAAGCGTTTTCATCACTTCAAAAATGGGATTTGTTCATGTGGAAATTATTGGTAG 2979 40.42 MAVVAPLFSGRHRSPIMYKPTPTPTPTPTPTPISIFKNSLLSTSTPKSSYFFVSPRTQTHQSRSINPVSQLSLLEEISKLCEAGDLNGALDFLQRAWKNNAGYDLAQRKEAMGKLLQKCGQYKNVEIGRKLDEMLCVSSQFSSDFVLNTRLITMYSICGYPLESRLVFDRLQNKNLFQWNALVSGYVRNQLYDEAIHTFIELISVTEFQPDNFTFPCLIKACTGKCDVHLGKSVHGMVVKMGLIMDLFVGNAMISLYGKRGFLDEAVEVFDKMPEQNLISWNSLICGFSENGFWLEAYRAFRSLLESGDGLTPDVATMVTLLPVCSGEGNVDMGMMIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFCKIENKNVVSWNSMIGAYSREGFVFETFDLLRKMWKEEKMTEVNEVTILNSLPACLEETELLSLKALHGYSLRFSFQYEELINNGFIAAYAKCGSLVSAEHVFFGMNTKSVSSWNAIIGEYAQNGDPRKALDFYFEMTRLGILPDDFSIVSLLLACGRLGHLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTCFERMENKNSVCWNAMLSGLSQNELPNETLSSFRQMLSEGLEPDEITIVSVLGACSQLSALGLGKEVHCFVLKNSLMEDNFVACSLMDMYAKSGFLGHSQQIFNGLNDKEVASWNVMITGFGVHGQGNKAVELFEDMQRSNKQPDRFTFLGVLQACCHAGLVSEGMYYLAQMQTLYKLEPELKHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITHVDLEMGEKFGEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDAGCSWIELQGKVYSFIAGENSNSSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKIKILKGHSEKLAISFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKNGICSCGNYW 992
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24759071 24762049 + MELO3C017260.2.1 Cme02g01797 321686

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01797 992 Pfam E motif 802 864 IPR046848 -
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 246 280 IPR002885 -
Cme02g01797 992 Pfam DYW family of nucleic acid deaminases 900 992 IPR032867 GO:0008270
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 685 719 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 279 308 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 486 518 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 760 785 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 251 277 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 382 410 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 688 720 IPR002885 -
Cme02g01797 992 TIGRFAM PPR: pentatricopeptide repeat domain 586 620 IPR002885 -
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 410 IPR002885 -
Cme02g01797 992 Pfam PPR repeat family 583 630 IPR002885 -
Cme02g01797 992 Pfam PPR repeat family 685 733 IPR002885 -
Cme02g01797 992 Pfam PPR repeat family 482 529 IPR002885 -
Cme02g01797 992 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 140 331 - -
Cme02g01797 992 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 332 428 - -
Cme02g01797 992 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 402 980 - -
Cme02g01797 992 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 332 428 - -
Cme02g01797 992 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 140 331 - -
Cme02g01797 992 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 402 980 - -
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 210 IPR002885 -
Cme02g01797 992 Gene3D Tetratricopeptide repeat domain 520 638 IPR011990 GO:0005515
Cme02g01797 992 Gene3D Tetratricopeptide repeat domain 340 436 IPR011990 GO:0005515
Cme02g01797 992 Gene3D Tetratricopeptide repeat domain 53 227 IPR011990 GO:0005515
Cme02g01797 992 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 584 618 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 353 381 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 251 277 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 279 308 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 382 409 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 760 785 IPR002885 -
Cme02g01797 992 Pfam PPR repeat 179 203 IPR002885 -
Cme02g01797 992 Gene3D Tetratricopeptide repeat domain 639 911 IPR011990 GO:0005515
Cme02g01797 992 Gene3D Tetratricopeptide repeat domain 228 339 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01797 - - - cmo:103494078 1981.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01797 Cme-Chr2:24759071 Cme06g00977 Cme-Chr6:6937746 0 dispersed
Cme07g01962 Cme-Chr7:24721897 Cme02g01797 Cme-Chr2:24759071 6.50E-143 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g410 . . . . . . . . . . Cma10g00273 . . . . . . Bhi02g00048 . . . . . . Cla06g01516 . . . . . . . . Cone13ag0018 . . . . . . . . . . . . . . Cmo10g00292 . . . . . . . . . . . . . . . . . . . . . . . Chy02g02418 Cme02g01797
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011822 1 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 0 1 1 1 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01797 Cme_Chr02 FPKM 4.321205 4.041786 0.0 0.072973 2.855983 3.071533 3.235684 0.388251 0.16275 0.465419