Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01804 ATGCAAGACATACACTCGATCGCCGGAGGGAGTCGGTTGTTCGGCGGCGGGGGAGGCGGAGACCGTCGTTTACGGCCACATCTTCACCACCATCAAAACCATCAAGCTTTGAAGTGTCCAAGGTGTGATTCTCTTAATACCAAGTTTTGTTATTATAATAATTATAATCTCTCTCAGCCACGTCATTTCTGCAAGAGCTGCCGTCGTTACTGGACGAAAGGTGGCGTCCTACGTAACGTCCCCGTCGGGGGTGGTTGCCGGAAAACGAAACGCTCTTCGTCTTCTAAATCTAAGTCTAACTCCTCCTCCGACGCAGTGGCGACTCCTCCTCCACCTCCTCCTCCTGCTCTTCCTCTTCCACCTCGTGATCGCAAATCCACTTCTCATTCCAGTAGCGAGAGTTCGAGTTTAACCGCCACAACTACGACCGCCGCCGTGGCGACTGAGGCTGTGTCGGCTCCGTCGTCTAATTCGGCATCGGCTTTATTGAACGTACATGATACAAAATTGTTCACTGGTTCATCGACGACAAATACAAACCCTAATTTCGAAGTTCCGGACTGCGGGATTTTCTCGGAAATCGGAAGCTTCACCAGCTTGATCACATCGTCTAACGAGACATTACCGTTTGGATTTGGTAATATGGCGGACGTGACGGCGTTTGCGATGAATAATCACCATCAGTTTCAAAATCAGACGGCGAACCAATGGCCGCCTCCGCCTCCACCGCCGTCGCAGAGAATGATGAACGTTAACGATGAACTGAAGATACAGGGGATGACGACGGACAGCGGCGGCGGCGGAGGAGGAGGAGGAGGAGGGTATATGGATCAGACGGGTCAAATGGATCCGAATAGCAGATCAAACAACATTGGATTTGGAGCGTTAGATTGGCAATCGAACGGTGATCATCAAGTTTTGTTTGATTTACCCACAGCCGTTGATCAAGCATACTGGAGTCAAAATCAATGGAACGATCAAGACCAGCCGAATCTGTACCTTCCGTAA 1008 50.3 MQDIHSIAGGSRLFGGGGGGDRRLRPHLHHHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSSSSKSKSNSSSDAVATPPPPPPPALPLPPRDRKSTSHSSSESSSLTATTTTAAVATEAVSAPSSNSASALLNVHDTKLFTGSSTTNTNPNFEVPDCGIFSEIGSFTSLITSSNETLPFGFGNMADVTAFAMNNHHQFQNQTANQWPPPPPPPSQRMMNVNDELKIQGMTTDSGGGGGGGGGGYMDQTGQMDPNSRSNNIGFGALDWQSNGDHQVLFDLPTAVDQAYWSQNQWNDQDQPNLYLP 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24832269 24833759 + MELO3C017253.2.1 Cme02g01804 321693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01804 335 ProSitePatterns Zinc finger Dof-type signature. 39 75 IPR003851 GO:0003677|GO:0006355
Cme02g01804 335 MobiDBLite consensus disorder prediction 106 121 - -
Cme02g01804 335 MobiDBLite consensus disorder prediction 81 143 - -
Cme02g01804 335 MobiDBLite consensus disorder prediction 1 26 - -
Cme02g01804 335 PANTHER DOF ZINC FINGER PROTEIN DOF5.4 9 288 - -
Cme02g01804 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 288 IPR045174 GO:0003700|GO:0006355
Cme02g01804 335 MobiDBLite consensus disorder prediction 279 293 - -
Cme02g01804 335 Pfam Dof domain, zinc finger 35 91 IPR003851 GO:0003677|GO:0006355
Cme02g01804 335 MobiDBLite consensus disorder prediction 263 293 - -
Cme02g01804 335 ProSiteProfiles Zinc finger Dof-type profile. 37 91 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01804 Cme12g01696 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01804 Cme-Chr2:24832269 Cme12g01696 Cme-Chr12:23849030 5.30E-35 dispersed
Cme02g01804 Cme-Chr2:24832269 Cme12g00200 Cme-Chr12:2069742 1.07E-33 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40929 PF02701 zf-Dof 4.60E-33 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01804 - - csv:101212701 510.375