Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01813 ATGAGGTCTTGGCGCTTCGTTTCCACTGGATCCGTCGCCGACCTTAGTGTCATTGCCGTCTTGTTTCTCTTTCTACTTTCCAGCTTCAGTTTCACTTCAACAGAAGCCTATGACGCTCTTGATCCCAACGGGAACATCACAATCAAGTGGGATGTAATGAGCTGGACTCCAGATGGCTATGTTGCTGTTGTTACAATGTACAACTTCCAGCAATACCGCCATATTCAAGCTCCAGGTTGGACATTAGGGTGGACATGGGCAAAGAAAGAGGTCATCTGGAGCATGATGGGAGGCCAAACAACCGAACAGGGTGACTGCTCAAGATTCAAAGGAAATACTCCTCATTGCTGCAAGAAAGATCCAACTGTTGTGGATTTGTTGCCCGGAACACCTTACAATCAGCAGATTGCAAATTGTTGCAAAGGTGGAGTGATAAACTCATGGGCCCAAGACCCAGCTAATGCAGCAAGTTCGTTTCAAGTCAGTGTTGGTGCTGCAGGAACAAGTAACAAAACGGTCAAACTCCCTAAAAATTTCACGCTTAAAGCACCAGGACCTGGATACACTTGTGGGCCAGCAAAGATTGTGAGGCCAACCAAATTTGTTTCAGGAGATAAAAGAAGAGTAACTCAAGCTTTGATGACTTGGAACGTTACATGCACCTATTCTCAATTCCTGGCTCAGAAGACACCCACCTGTTGTGTTTCCCTCTCTTCCTTCTACAATGATACTATAGTCAACTGCCCAACCTGCACTTGTGGATGTCAAAATAACACGGCGGGTTCTGGGAGCTGTGTGGATCCAGATTCTCCCTATTTGGCTTCAGTTGTATCAGCTCCTGATAAATCAGGTAACAGTGCACCCTTGGTTCAGTGTACCAGCCACATGTGCCCTATTCGAGTCCATTGGCACGTGAAGCTGAATTACAAGGATTACTGGAGAGTGAAGATCACGATCACCAATTTCAATTACCGAATGAACTACACTCTCTGGAATCTGGTGGTGCAACATCCCAATTTTGATAATATCACTAAACTATTCAGCTTTAACTACAAGTCGTTGAGCCCATATGGTGACCTAAGTAAGTTATTTCTGAATATATCTATTCTCATCTCCTTTGATTGGAAAGAATCAGCATTATGCCATTTAGTTTCTCAACTTTATGGTTGGTAA 1173 44.16 MRSWRFVSTGSVADLSVIAVLFLFLLSSFSFTSTEAYDALDPNGNITIKWDVMSWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWTWAKKEVIWSMMGGQTTEQGDCSRFKGNTPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVINSWAQDPANAASSFQVSVGAAGTSNKTVKLPKNFTLKAPGPGYTCGPAKIVRPTKFVSGDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNNTAGSGSCVDPDSPYLASVVSAPDKSGNSAPLVQCTSHMCPIRVHWHVKLNYKDYWRVKITITNFNYRMNYTLWNLVVQHPNFDNITKLFSFNYKSLSPYGDLSKLFLNISILISFDWKESALCHLVSQLYGW 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24898747 24901932 - MELO3C017242.2.1 Cme02g01813 321702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01813 390 PANTHER COBRA-LIKE PROTEIN 11 361 - -
Cme02g01813 390 PIRSF COBRA 9 370 IPR006918 GO:0010215|GO:0031225
Cme02g01813 390 PANTHER PROTEIN COBRA 11 361 IPR006918 GO:0010215|GO:0031225
Cme02g01813 390 Pfam COBRA-like protein 60 223 IPR006918 GO:0010215|GO:0031225
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01813 - - - csv:101213424 743.806
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01813 Cme12g01924 CCT
Cme02g01813 Cme12g01924 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01287 Cme-Chr1:16218110 Cme02g01813 Cme-Chr2:24898747 7.45E-43 dispersed
Cme02g01813 Cme-Chr2:24898747 Cme07g01006 Cme-Chr7:11262888 0 dispersed
Cme02g01812 Cme-Chr2:24896065 Cme02g01813 Cme-Chr2:24898747 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g446 . . Bda06g00513 . Bpe12g00518 . . . Cmo13g01107 . Cma10g00289 Cma11g00218 Car10g00271 Car11g00197 Sed08g0288 . Cpe04g01449 Bhi02g00081 Tan09g2023 Cmetu02g0745 . Hepe09g0285 . . Cla06g01531 Cam06g1688 Cec06g1750 Cco06g1748 Clacu06g1655 Cmu06g1602 Cre06g2414 . . Cone13ag0029 . . . Chy12g01483 Cme12g01924 . . . . . . . . . Cmo10g00308 Cmo11g00221 Cma13g01062 . Car13g00898 . . Cpe18g00713 Bhi08g01067 . . Lac10g0179 Hepe07g2448 . . Cla04g01143 Cam04g1196 Cec01g1708 Cco01g1753 Clacu04g1222 Cmu04g1202 Cre01g1500 Lsi06g01402 Csa01g00341 Chy02g02401 Cme02g01813
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g01006 . 1 402 COBRA Gene Family AT5G60920 75.4 7.0e-195 676.8
Cme02g01812 . 55 452 COBRA Gene Family AT5G60920 68.9 8.4e-180 626.7
Cme07g01007 . 1 390 COBRA Gene Family AT5G60920 68.5 3.3e-176 614.8
Cme02g01813 CCT,ECH 48 361 COBRA Gene Family AT5G60920 81.9 3.4e-165 578.2
Cme12g01924 CCT,ECH 1 396 COBRA Gene Family AT5G60920 60.5 7.1e-147 517.3
Cme06g01212 . 50 441 COBRA Gene Family AT5G60920 53.4 2.2e-127 452.6
Cme07g01006 . 1 405 COBRA Gene Family AT3G02210 75.1 1.2e-190 662.9
Cme02g01812 . 27 433 COBRA Gene Family AT3G02210 68.2 4.6e-179 624.4
Cme07g01007 . 1 390 COBRA Gene Family AT3G02210 66.8 1.2e-166 583.2
Cme02g01813 CCT,ECH 23 361 COBRA Gene Family AT3G02210 75.2 6.0e-163 570.9
Cme12g01924 CCT,ECH 3 381 COBRA Gene Family AT3G02210 62.0 6.7e-146 514.2
Cme06g01212 . 23 436 COBRA Gene Family AT3G02210 54.2 6.3e-136 481.1
Cme07g01006 . 1 400 COBRA Gene Family AT3G29810 72.3 7.9e-184 640.2
Cme02g01812 . 38 435 COBRA Gene Family AT3G29810 67.3 3.0e-175 611.7
Cme07g01007 . 1 375 COBRA Gene Family AT3G29810 67.2 1.8e-164 575.9
Cme02g01813 CCT,ECH 21 357 COBRA Gene Family AT3G29810 75.4 2.1e-160 562.4
Cme12g01924 CCT,ECH 1 399 COBRA Gene Family AT3G29810 57.9 3.3e-142 501.9
Cme06g01212 . 32 445 COBRA Gene Family AT3G29810 53.6 1.8e-135 479.6
Cme02g01812 . 32 363 COBRA Gene Family AT5G15630 84.0 1.2e-179 625.9
Cme07g01007 . 1 304 COBRA Gene Family AT5G15630 82.6 3.8e-162 567.8
Cme02g01813 CCT,ECH 31 362 COBRA Gene Family AT5G15630 73.6 3.1e-151 531.6
Cme07g01006 . 1 310 COBRA Gene Family AT5G15630 67.7 4.9e-133 471.1
Cme12g01924 CCT,ECH 1 302 COBRA Gene Family AT5G15630 61.9 1.3e-120 429.9
Cme06g01212 . 38 356 COBRA Gene Family AT5G15630 50.6 1.4e-95 346.7
Cme02g01813 CCT,ECH 16 224 COBRA Gene Family AT5G60950 56.2 6.5e-64 240.7
Cme02g01812 . 51 231 COBRA Gene Family AT5G60950 58.0 4.0e-58 221.5
Cme07g01006 . 1 172 COBRA Gene Family AT5G60950 59.3 1.5e-57 219.5
Cme07g01007 . 1 172 COBRA Gene Family AT5G60950 55.8 9.7e-52 200.3
Cme12g01924 CCT,ECH 3 174 COBRA Gene Family AT5G60950 51.2 3.4e-41 165.2
Cme06g01212 . 31 429 COBRA Gene Family AT1G09790 59.5 1.2e-147 520.0
Cme02g01812 . 41 434 COBRA Gene Family AT1G09790 53.7 1.7e-133 473.0
Cme07g01006 . 12 379 COBRA Gene Family AT1G09790 55.8 4.0e-127 451.8
Cme07g01007 . 4 375 COBRA Gene Family AT1G09790 51.7 4.3e-121 431.8
Cme02g01813 CCT,ECH 32 357 COBRA Gene Family AT1G09790 52.0 9.9e-102 367.5
Cme06g00765 . 39 639 COBRA Gene Family AT4G16120 67.3 2.4e-253 871.7
Cme06g02279 . 89 698 COBRA Gene Family AT4G16120 53.3 9.6e-202 700.3
Cme04g00837 . 49 654 COBRA Gene Family AT4G16120 52.5 2.2e-198 689.1
Cme06g00765 . 12 639 COBRA Gene Family AT3G16860 62.8 1.8e-240 828.9
Cme06g02279 . 89 685 COBRA Gene Family AT3G16860 53.1 3.3e-194 675.2
Cme04g00837 . 47 655 COBRA Gene Family AT3G16860 51.3 1.9e-189 659.4
Cme06g00765 . 7 650 COBRA Gene Family AT5G49270 59.7 1.9e-237 818.9
Cme06g02279 . 89 684 COBRA Gene Family AT5G49270 51.3 1.9e-194 676.0
Cme04g00837 . 53 650 COBRA Gene Family AT5G49270 51.6 2.5e-189 659.1
Cme04g00837 . 10 673 COBRA Gene Family AT3G20580 60.5 7.4e-250 860.1
Cme06g02279 . 28 705 COBRA Gene Family AT3G20580 60.4 1.8e-248 855.5
Cme06g00765 . 32 631 COBRA Gene Family AT3G20580 54.7 7.2e-205 710.7
Cme06g02279 . 89 706 COBRA Gene Family AT4G27110 61.8 3.2e-237 818.1
Cme04g00837 . 47 661 COBRA Gene Family AT4G27110 60.5 8.4e-230 793.5
Cme06g00765 . 15 657 COBRA Gene Family AT4G27110 51.9 4.8e-201 698.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001464 2 2 2 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 3 2 2 3 2 2 3 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme02g01813 Cme_Chr02 FPKM 43.868107 40.721272 54.510574 56.722454 37.814339 40.412361 44.285858 81.838097 80.499626 91.350151