Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01824 ATGATATATGAAAATTATAAGGATATGTTGAGGAATAGTAATTCAAAAGATCAAAAGGGGAGTGAAGCAAAAGAAGAAGGAATATCAATTAGAAGTAGTAGTAGTAATAACAATGATGGAAAATATAGTTTCCCAAAGGCTCCAACAAGTAGTTCAAGACAATGGTCAGGATTCAGAAATCCAAGAATTGTTAGAGTTTCTCGTTCATTTGGAGGCAAAGATAGGCATAGCAAAGTTTGTACAATTAGAGGTTTGAGAGATAGAAGGATTAGACTTTCAGTTCCAACAGCAATTCAACTCTATGATCTTCAAGACAAGCTCAAACTTGGCCAACCTAGTAAAGTCATCGATTGGCTTCTCGACGTCACGAAACTCGACATTGACAACCTCCCCCCGCTCCAAATCCCCCCTGGTTTCTCTCCGTTCCACCAACAAATGCTCTTCCCTCAGTACGTTGATCCTCATCATCATTATTACACTTCTTCTTCCTCTTCTTCCTCTTCCCGGTTTTGTAATTCCCAACCTCCTCCGTTTATGCTCGATGTGAAGAGTACCGATGCGTATCAAACGACAATGACGGTAGAAAAAACGAAGCTTTGGGATATGGATTTAGCAGTATTACCAGAAAAAGCAGGATCAGCGACGACTGCGGCAACGACGACAAAAGGGAAGTGGATTGATGGAAGTAATAATGATAGTAATAGTACTCAACAAGTAGAAGATTACAATGAGCAAATTTCATCTCAAAAGCTCTTATCAATGGCTATTTGTTCTTCAAATTTACCCAACATGATGAACAATAATAATTCTACTCCTTACAATAATTACAACTCTTCTCATGATCATCATCATCACCGACAGCAACCTTCTTGTTTATCACTTTCACAATTTGGGAACAATAATAATAGTAATGGAATTTTTCCATCACAATTAGTTGAGGCTGCTCAAGCAAGTACTTCATCATCTTCAAGTAGTTCTTCACTATTTTTCACTCCTTATGCTTCATATATTACCAATCCATTTGAAAGTCACATCCATTTCTTGAGCTCAAATTCTCATGCTTTGTCCAATAATCCCTTCATGTCTTCATCTCTCCATCCTTTTGCCACCTCACAAAACTTGAAACCCTTTCCACCTCCAAGTTTCAATCTCAAGCAGCTTTTTCATGCAGCTGACACCAATAATAATGCCGGTGGCAGCGCCGGTGCTGGCTCTTCTGCGAAAGACGGGGCGGCCGGGAACTCGTAG 1248 39.58 MIYENYKDMLRNSNSKDQKGSEAKEEGISIRSSSSNNNDGKYSFPKAPTSSSRQWSGFRNPRIVRVSRSFGGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLKLGQPSKVIDWLLDVTKLDIDNLPPLQIPPGFSPFHQQMLFPQYVDPHHHYYTSSSSSSSSRFCNSQPPPFMLDVKSTDAYQTTMTVEKTKLWDMDLAVLPEKAGSATTAATTTKGKWIDGSNNDSNSTQQVEDYNEQISSQKLLSMAICSSNLPNMMNNNNSTPYNNYNSSHDHHHHRQQPSCLSLSQFGNNNNSNGIFPSQLVEAAQASTSSSSSSSSLFFTPYASYITNPFESHIHFLSSNSHALSNNPFMSSSLHPFATSQNLKPFPPPSFNLKQLFHAADTNNNAGGSAGAGSSAKDGAAGNS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 24983902 24986084 - MELO3C017230.2.1 Cme02g01824 321713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01824 415 MobiDBLite consensus disorder prediction 1 56 - -
Cme02g01824 415 MobiDBLite consensus disorder prediction 27 56 - -
Cme02g01824 415 MobiDBLite consensus disorder prediction 10 26 - -
Cme02g01824 415 MobiDBLite consensus disorder prediction 275 295 - -
Cme02g01824 415 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 415 IPR005333 GO:0003700
Cme02g01824 415 MobiDBLite consensus disorder prediction 393 415 - -
Cme02g01824 415 PANTHER TRANSCRIPTION FACTOR TCP5 4 415 - -
Cme02g01824 415 Pfam TCP family transcription factor 72 226 IPR017887 -
Cme02g01824 415 ProSiteProfiles TCP domain profile. 72 130 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01824 Cme12g01933 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01824 Cme-Chr2:24983902 Cme08g00127 Cme-Chr8:922389 5.30E-25 dispersed
Cme12g01933 Cme-Chr12:25334307 Cme02g01824 Cme-Chr2:24983902 1.17E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40931 PF03634 TCP 5.10E-20 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01824 - - cmo:103494051 724.931