Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme02g01827 | ATGGCGAGCGCACCAACTGCTGGCGGAATATCAAAGATTTTGTCAAATCCATCACCGGACTCCCCCACCGATGTCCCGGACGTTGTGGTTCAGGTCATTGATCTCAAGGCGACGGGAAATCGCTACATATTCAGGTTTACTGCTAGCGATGGCGACATGAAGCTTAAAGCCATTCTTCCATCAAATCTGACTTCTGACGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCGAACAAGTCAGACAAGTATTTAATAGTGGCAAAATGTGTGGTGGTTTCTCCTGCTTTAGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCGGGCATTGTTTTGAAACCGAAGGTAGAGCTCGACGATAAGAGCAAATTTAACAATGGATCTGGTATTCTTCTGAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTATGAATATGGCACCAGCTGCCCGGATGTCCATGACAAGGCGAGTTCAGCCCCTTGTCTACTTAAACCCTTACCTGGGAGATTGGACCATCAAAGTTCGTGTTACTGATAAAGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTAGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACAATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAGTTTTCCCTCGGCAAAGTCTATTATGTTTCCAGGGGAACTTTGAAAGTTGCCAATAAGAAATTTAAGACTGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGACGAGGTCAGCAGTGAAGCTGCTTTTGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGGTTCACATGTACTTTTTCAACTGCCAGATGTAATTGGAGTTGTTCAAAATGTTTCTTCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAAACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCCACCACTGTAGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCCATAATTGCAGTGAAATATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACAATAAGCAGGAGCTCAATTACAATTAACCCTGACATAAAGGAAGCACATGATTTGAGATCATGGTATGACGCTGAAGGTAAAGCCGTATCCATGTCTTCTGTAAGCTCCGGCATGAGCCCATCAACTAAGAGCGGTTCTAGGTCCATGTACTCTGACCGGGTTTCCTTATCTCATATAAACCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATTAGAGCATATGTCAGCTTTATCAAACCTGATCAAACAATGTGGTATCGTGCTTGCAAAACATGCAACAAGAAGGTAACTGAAGCCATCGGATCTGGCTATTGGTGCGACAATTGCCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTGTCTGATGCAAGTGGTGAAGTTTGGGTCTCTACATTCAACGAAGAAGCAGAGAGAATCATTGGATGCTCTGCTGATGAACTTGATCAGCTCAAATCGCAGATTGGTGAGGAGAATTCATATCAACTTAAACTCAAAGAAGCCACATGGGTTCCCCACTTATTTCGAGTCAGCGTTTCACAGAACGAATACAACAATGAGAAGAGACAAAGGATCACCGTCAGGTCAGTTGCTCCAGTCGATTTTGCTGCTGAGTCCAGATTTTTGCTAGAAGAGATAGCAAAAATGAAAGCTTCGTAA | 1905 | 41.73 | MASAPTAGGISKILSNPSPDSPTDVPDVVVQVIDLKATGNRYIFRFTASDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKSDKYLIVAKCVVVSPALEKEVKTEVKKEEAGIVLKPKVELDDKSKFNNGSGILLKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSSEAAFVPETKYNFVKIDMLGPHVNGRDLVGSHVLFQLPDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDAEGKAVSMSSVSSGMSPSTKSGSRSMYSDRVSLSHINQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEVWVSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 25012380 | 25016613 | - | MELO3C017228.2.1 | Cme02g01827 | 321716 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme02g01827 | 634 | Pfam | Replication factor-A protein 1, N-terminal domain | 6 | 105 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cme02g01827 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 322 | 435 | IPR012340 | - | |
Cme02g01827 | 634 | CDD | RPA1_DBD_B | 325 | 429 | - | - | |
Cme02g01827 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 3 | 107 | IPR012340 | - | |
Cme02g01827 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 183 | 287 | IPR012340 | - | |
Cme02g01827 | 634 | Gene3D | - | 6 | 114 | IPR012340 | - | |
Cme02g01827 | 634 | SUPERFAMILY | Nucleic acid-binding proteins | 457 | 631 | IPR012340 | - | |
Cme02g01827 | 634 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 7 | 629 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cme02g01827 | 634 | CDD | RPA1_DBD_A | 181 | 284 | - | - | |
Cme02g01827 | 634 | Coils | Coil | 549 | 569 | - | - | |
Cme02g01827 | 634 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cme02g01827 | 634 | Pfam | Replication protein A OB domain | 325 | 415 | IPR031657 | - | |
Cme02g01827 | 634 | Pfam | Replication factor-A C terminal domain | 478 | 624 | IPR013955 | - | |
Cme02g01827 | 634 | Gene3D | - | 442 | 631 | IPR012340 | - | |
Cme02g01827 | 634 | PANTHER | REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED | 7 | 629 | - | - | |
Cme02g01827 | 634 | Pfam | OB-fold nucleic acid binding domain | 192 | 277 | IPR004365 | GO:0003676 | |
Cme02g01827 | 634 | Gene3D | - | 292 | 441 | IPR012340 | - | |
Cme02g01827 | 634 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 6 | 630 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cme02g01827 | 634 | CDD | RPA1_DBD_C | 474 | 630 | IPR013955 | - | |
Cme02g01827 | 634 | Gene3D | - | 178 | 287 | IPR012340 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g01827 | Cme-Chr2:25012380 | Cme06g02413 | Cme-Chr6:31259518 | 4.61E-87 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme02g01827 | K07466 | - | csv:101208545 | 1127.46 |