Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01827 ATGGCGAGCGCACCAACTGCTGGCGGAATATCAAAGATTTTGTCAAATCCATCACCGGACTCCCCCACCGATGTCCCGGACGTTGTGGTTCAGGTCATTGATCTCAAGGCGACGGGAAATCGCTACATATTCAGGTTTACTGCTAGCGATGGCGACATGAAGCTTAAAGCCATTCTTCCATCAAATCTGACTTCTGACGTCATTTCTGGAAACATTCAAAATTTGGGGCTTATTCGCATTCTTGACTACTCTCTCAATGATATTCCGAACAAGTCAGACAAGTATTTAATAGTGGCAAAATGTGTGGTGGTTTCTCCTGCTTTAGAAAAGGAGGTAAAAACTGAGGTTAAGAAAGAGGAAGCGGGCATTGTTTTGAAACCGAAGGTAGAGCTCGACGATAAGAGCAAATTTAACAATGGATCTGGTATTCTTCTGAAACCAAAGCAAGAATTGGTTGCCAAATCAGCTGCTCAGATTGTACACGAGCAGCGTATGAATATGGCACCAGCTGCCCGGATGTCCATGACAAGGCGAGTTCAGCCCCTTGTCTACTTAAACCCTTACCTGGGAGATTGGACCATCAAAGTTCGTGTTACTGATAAAGGAAACCTGCGTACATACAAGAATGCTCAAGGAGAAGGTTGTGTTTTCAATGTAGTGTTGACAGATGAAGATGGTACACAAATACAGGCAACAATGTTCAATGATGCTGCAAGGAAGTTCTATGAGAAGTTTTCCCTCGGCAAAGTCTATTATGTTTCCAGGGGAACTTTGAAAGTTGCCAATAAGAAATTTAAGACTGTTCAAAATGATTATGAAATGACTTTGAATGTGAATTCTCAAGTAGACGAGGTCAGCAGTGAAGCTGCTTTTGTTCCTGAAACAAAATATAATTTTGTCAAGATTGATATGTTAGGTCCTCACGTGAATGGAAGAGATCTTGTTGGTTCACATGTACTTTTTCAACTGCCAGATGTAATTGGAGTTGTTCAAAATGTTTCTTCTACAATGAGCATTCGAAGGAAAATCAACAATGAGACAGCTCCAAAACGTGATGTAACCATTGCTGATGAAACGAAGAAGACAGTTGTGATATCTTTGTGGAATGATCTTGCCACCACTGTAGGGCAGGAGTTGCTTGACATTGCCGACCAATCTCCCATAATTGCAGTGAAATATCTTAGAGTTGGAGACTTTCAAGGTGTATCTTTGTCGACAATAAGCAGGAGCTCAATTACAATTAACCCTGACATAAAGGAAGCACATGATTTGAGATCATGGTATGACGCTGAAGGTAAAGCCGTATCCATGTCTTCTGTAAGCTCCGGCATGAGCCCATCAACTAAGAGCGGTTCTAGGTCCATGTACTCTGACCGGGTTTCCTTATCTCATATAAACCAAAACAAATCTTTGGGAGAAGAAAAGCCAATGTTCTTCAGCATTAGAGCATATGTCAGCTTTATCAAACCTGATCAAACAATGTGGTATCGTGCTTGCAAAACATGCAACAAGAAGGTAACTGAAGCCATCGGATCTGGCTATTGGTGCGACAATTGCCAGAAAAACGATGAAGAATGCAGTTTAAGGTACATAATGGTTGTGAGAGTGTCTGATGCAAGTGGTGAAGTTTGGGTCTCTACATTCAACGAAGAAGCAGAGAGAATCATTGGATGCTCTGCTGATGAACTTGATCAGCTCAAATCGCAGATTGGTGAGGAGAATTCATATCAACTTAAACTCAAAGAAGCCACATGGGTTCCCCACTTATTTCGAGTCAGCGTTTCACAGAACGAATACAACAATGAGAAGAGACAAAGGATCACCGTCAGGTCAGTTGCTCCAGTCGATTTTGCTGCTGAGTCCAGATTTTTGCTAGAAGAGATAGCAAAAATGAAAGCTTCGTAA 1905 41.73 MASAPTAGGISKILSNPSPDSPTDVPDVVVQVIDLKATGNRYIFRFTASDGDMKLKAILPSNLTSDVISGNIQNLGLIRILDYSLNDIPNKSDKYLIVAKCVVVSPALEKEVKTEVKKEEAGIVLKPKVELDDKSKFNNGSGILLKPKQELVAKSAAQIVHEQRMNMAPAARMSMTRRVQPLVYLNPYLGDWTIKVRVTDKGNLRTYKNAQGEGCVFNVVLTDEDGTQIQATMFNDAARKFYEKFSLGKVYYVSRGTLKVANKKFKTVQNDYEMTLNVNSQVDEVSSEAAFVPETKYNFVKIDMLGPHVNGRDLVGSHVLFQLPDVIGVVQNVSSTMSIRRKINNETAPKRDVTIADETKKTVVISLWNDLATTVGQELLDIADQSPIIAVKYLRVGDFQGVSLSTISRSSITINPDIKEAHDLRSWYDAEGKAVSMSSVSSGMSPSTKSGSRSMYSDRVSLSHINQNKSLGEEKPMFFSIRAYVSFIKPDQTMWYRACKTCNKKVTEAIGSGYWCDNCQKNDEECSLRYIMVVRVSDASGEVWVSTFNEEAERIIGCSADELDQLKSQIGEENSYQLKLKEATWVPHLFRVSVSQNEYNNEKRQRITVRSVAPVDFAAESRFLLEEIAKMKAS 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25012380 25016613 - MELO3C017228.2.1 Cme02g01827 321716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01827 634 Pfam Replication factor-A protein 1, N-terminal domain 6 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cme02g01827 634 SUPERFAMILY Nucleic acid-binding proteins 322 435 IPR012340 -
Cme02g01827 634 CDD RPA1_DBD_B 325 429 - -
Cme02g01827 634 SUPERFAMILY Nucleic acid-binding proteins 3 107 IPR012340 -
Cme02g01827 634 SUPERFAMILY Nucleic acid-binding proteins 183 287 IPR012340 -
Cme02g01827 634 Gene3D - 6 114 IPR012340 -
Cme02g01827 634 SUPERFAMILY Nucleic acid-binding proteins 457 631 IPR012340 -
Cme02g01827 634 PANTHER REPLICATION FACTOR A 1, RFA1 7 629 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cme02g01827 634 CDD RPA1_DBD_A 181 284 - -
Cme02g01827 634 Coils Coil 549 569 - -
Cme02g01827 634 MobiDBLite consensus disorder prediction 1 23 - -
Cme02g01827 634 Pfam Replication protein A OB domain 325 415 IPR031657 -
Cme02g01827 634 Pfam Replication factor-A C terminal domain 478 624 IPR013955 -
Cme02g01827 634 Gene3D - 442 631 IPR012340 -
Cme02g01827 634 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT B-RELATED 7 629 - -
Cme02g01827 634 Pfam OB-fold nucleic acid binding domain 192 277 IPR004365 GO:0003676
Cme02g01827 634 Gene3D - 292 441 IPR012340 -
Cme02g01827 634 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 6 630 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cme02g01827 634 CDD RPA1_DBD_C 474 630 IPR013955 -
Cme02g01827 634 Gene3D - 178 287 IPR012340 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01827 Cme-Chr2:25012380 Cme06g02413 Cme-Chr6:31259518 4.61E-87 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01827 K07466 - csv:101208545 1127.46