Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01834 ATGGCGTCCGCTAAGCGATGCCACTACGAGGTCCTCGGCCTCCACATCGACTGTACCGCCGATGAAATTCGATCGGCGTACCGGAAGCTAGCTCTTCAGCGCCACCCCGATAAGCTTGTCCAGTCCGGTTTGTCACAAGCTGATGCCACCGCTCAGTTTCAAGAGCTCCAGCACGCTTACGAGGTTCTTTCCGATCCTAAAGAACGCGCCTGGTACGATTCTCATCGTTCCCAAATCCTCTTTTCTGATGCCGGGTCGGTTAATTCCAGCTCTGCTGTTCCCAATCTCTTTCCGTTCTTCTCTAATACTGTTTATTCTGGCTATTCCGATTCTGGGCGAGGGTTCTATAAAATCTATTCTGACCTTTTTGATAAAATTTATGGGAATGAGATTAATTTCGCTAAGAAATTAGGATTGCGTTTGGATATGGTTCGTGAAGCTCCGGTTATGGGGAATTTGGATAGTCCGTATACGCAGGTGACTGCGTTCTATAATTACTGGCTTGGGTTTTGTACGGTTATGGATTTTTGCTGGGCTGATCAGTACGATGTCATGGCCGGTCCCAACCGGAAATCGAGGAGGTTAATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCAAAGAGGGAGTACAATGAGACAGTGAGAGGTTTGGCTGAGTTTGTGAAGAAGAGAGATAAAAGGGTGATTGATATGGCGATGAAAAGGAACATGGAAATGGAGAAGAAGAAGGAAGAGGAGAGGGAAAGGAAAAAAAGGTTAGAGAGGGAGAAGATGGAGAAGCTTAGGACATATGAGGAACCAGATTGGGCAAAGGTTGAAGAAGTTGAGGAGGATGAAGAAGATGTGTTTGAGGAAGAAAATAGGAGAGGGAAAGAGCTGTACTGTGTTTTGTGTGGGAAGAAGTTCAAAAGTGAAAAGCAATGGAAGAATCACGAACAGTCGAAGAAGCACAAGGAGAAGGTTGCAGAGTTCAAAGAATCACTAGATGATGAGGATGAATCTGAAGAATTTGTTGATCAAGGGGAAGGTGAAGAAGAAACTACACTGCAGGATGATGAGGTTGATAAACTAGGGGAGGAGTTCAAGGAAAGTTTTGATATTGAGGAAGAAGAAACCGAAAGTGGGGGAGGACTTAGTGGGAGTGAATACAATGATGTTCATGAAGTTGATAGATCAGATATGGTTGGTGAGGCACTTGGATCAAATGATGACGAAGAAAGAGATATTCTTGAAGCAATGGCAACTGGACTTCGAAATAGGAAAAATGCAGCTTCAGTGAATCAGCCTGAAGCTTCCCCAGTCAAAACTCATTTTGAAAATGAGAACGATGAGCCTAATCCAGCTGAGTTCGAAAATGGTAAGAGGGGAAAAAAGAGTCGTCGAGCCAAAAAGAAGGGCAAGGGAAACGATGAAGCTATGAATGAAACAGATTCTCGAAATTATAAAACTAACGGAGATGATTCATCACATCAGCAGGATTCCACTTCCAATTCGTTGCATAATGACGAAACTAGTGATAAGGGGGCCAGTGAGTTGGCTAAAGAACAAAGGGCTTCAAGTAAATCTGCTGATCGGAAAGCAGTCACGCAGAATGACATGAAGATCAACTCTAGACACTCATCTAAAGGAAAGAAATCCAAGGCAACGTCGAAAGATTCTGGCAATTCATGTGAAACATGTGGAGAGGAATTTGACTCAAGACCCTTGGCGGAGGTCAACCAGAAGAGAGTTAATTATGTTATTTAG 1749 43.91 MASAKRCHYEVLGLHIDCTADEIRSAYRKLALQRHPDKLVQSGLSQADATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDAGSVNSSSAVPNLFPFFSNTVYSGYSDSGRGFYKIYSDLFDKIYGNEINFAKKLGLRLDMVREAPVMGNLDSPYTQVTAFYNYWLGFCTVMDFCWADQYDVMAGPNRKSRRLMEEDNKKLRKKAKREYNETVRGLAEFVKKRDKRVIDMAMKRNMEMEKKKEEERERKKRLEREKMEKLRTYEEPDWAKVEEVEEDEEDVFEEENRRGKELYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKESLDDEDESEEFVDQGEGEEETTLQDDEVDKLGEEFKESFDIEEEETESGGGLSGSEYNDVHEVDRSDMVGEALGSNDDEERDILEAMATGLRNRKNAASVNQPEASPVKTHFENENDEPNPAEFENGKRGKKSRRAKKKGKGNDEAMNETDSRNYKTNGDDSSHQQDSTSNSLHNDETSDKGASELAKEQRASSKSADRKAVTQNDMKINSRHSSKGKKSKATSKDSGNSCETCGEEFDSRPLAEVNQKRVNYVI 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25055530 25058206 + MELO3C017222.2.1 Cme02g01834 321723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01834 582 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Cme02g01834 582 MobiDBLite consensus disorder prediction 385 415 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 329 354 - -
Cme02g01834 582 PRINTS DnaJ domain signature 48 68 IPR001623 -
Cme02g01834 582 PRINTS DnaJ domain signature 27 42 IPR001623 -
Cme02g01834 582 PRINTS DnaJ domain signature 9 27 IPR001623 -
Cme02g01834 582 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Cme02g01834 582 SUPERFAMILY Chaperone J-domain 4 89 IPR036869 -
Cme02g01834 582 CDD DnaJ 7 65 IPR001623 -
Cme02g01834 582 SUPERFAMILY beta-beta-alpha zinc fingers 286 340 IPR036236 -
Cme02g01834 582 SMART dnaj_3 6 68 IPR001623 -
Cme02g01834 582 Coils Coil 193 213 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 421 436 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 306 567 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 437 457 - -
Cme02g01834 582 Gene3D Classic Zinc Finger 280 343 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 466 487 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 505 533 - -
Cme02g01834 582 Pfam DnaJ domain 8 73 IPR001623 -
Cme02g01834 582 ProSitePatterns Zinc finger C2H2 type domain signature. 296 318 IPR013087 -
Cme02g01834 582 Gene3D DnaJ domain 1 90 IPR036869 -
Cme02g01834 582 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 568 IPR044648 -
Cme02g01834 582 Pfam Zinc-finger double-stranded RNA-binding 294 319 IPR022755 -
Cme02g01834 582 Coils Coil 230 264 - -
Cme02g01834 582 SMART ZnF_U1_5 291 325 IPR003604 GO:0003676|GO:0008270
Cme02g01834 582 MobiDBLite consensus disorder prediction 488 504 - -
Cme02g01834 582 MobiDBLite consensus disorder prediction 306 328 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01834 Cme-Chr2:25055530 Cme06g01216 Cme-Chr6:9789905 1.66E-20 dispersed
Cme02g01834 Cme-Chr2:25055530 Cme09g01428 Cme-Chr9:19478319 1.65E-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40932 PF00226 DnaJ 4.00E-21 CL0392 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01834 K09506 - csv:101217729 986.482