Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01848 ACTTTTGTTCAATGCCAAAGAAAGAGAATCTCTGTTCTTCCTTTCCTTCTTTCTTCCTTTGCTTTTCACCGTAGGATTCTTCGAGTTCCTTCGAAAATGGCGGCTCCAACAAGATCGGAGGCTCTTTCGCTTCTCCGCTCTCTGATCCGTACATCCCGTCAGTTCTGCGATTACAACATCAGAGAGTACGCCAAACGACGCGTCGTCGATGGCTTCCGCCATAACCGAAACCTTTCCGACCCTTCATCCATTTCCTCCGCCTACGCCGATGGAAAGGCTCAGCTTGAAGTTGCTAAAAGACAGTCAGCCATTTACTCCCTCTATGCGCCGAAGGTAAAGAGCATCATGGAGGCTCATCGCATAAACTGA 369 48.78 TFVQCQRKRISVLPFLLSSFAFHRRILRVPSKMAAPTRSEALSLLRSLIRTSRQFCDYNIREYAKRRVVDGFRHNRNLSDPSSISSAYADGKAQLEVAKRQSAIYSLYAPKVKSIMEAHRIN 122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25150328 25151050 - MELO3C017207.2.1 Cme02g01848 321737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01848 122 PANTHER OS08G0239000 PROTEIN 32 119 - -
Cme02g01848 122 PANTHER OS08G0239000 PROTEIN 32 119 - -
Cme02g01848 122 CDD Complex1_LYR_LYRM4 40 108 IPR045297 GO:0016226
Cme02g01848 122 Pfam Complex 1 protein (LYR family) 40 96 IPR008011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01848 K22069 LYRM4; LYR motif-containing protein 4 - csv:105436356 158.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01960 Cme-Chr12:25488833 Cme02g01848 Cme-Chr2:25150328 2.38E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g618 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme02g01848
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003352 1 2 1 1 1 2 2 2 2 2 2 2 1 2 2 1 2 1 2 2 1 2 2 0 2 2 1 3 2 1 49