Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01854 ATGGATCTTCCGTTTCAGGAAACTAACGATAGAAAAACTCCTGATTACAATGATGTGCGAAGAGGGCATTTCGTCATGAAACTCATAGACGACTCTGTTTCGCATAATGGGTTCGAATCTATTGCTCGTATTTTCTCTAAGTATCGTGGTTCTATCAATTCTCAGCAGTGTAACTCGATGATCAGGCGTTATTTGGATTTGAATAAGCATTTAAATTCACTGTACATTTTTGCCCAAATGCATAAATTTAGTATTCTGCCCGATTTATCTACTTTTCCTGCTGTTCTTAAAGCAACTGCGCAGCTATGTGATACTGAAGTTGGAAAAATGATACATGGTATTGTTATTCAGATGGGTTTTATTTGCGATGTCTACACCAGTACCGCTTTAGTTCATATGTATTCTACTTGTTTGTCTATATCTGATGCTTCTCAGGTGTTCGACGAAATGGCCGAGAGAAATGCAGTTACTTGGAATGCTTTGATTACTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCGATGCTTTCCGAGGAATGTTGGCAGCTGGGGCTCAACCGAGTGAGAGAACCGTGGTTCTAGTTCTATCGGCTTGTTCTCATTTGGGAGCTTTGAATCAGGGAAAGTGGATCCATGATTTTATTTATCATAATAGGTTGAGACTGAACGTGTTTGTGGGCACAGCTCTTATTGATATGTATGCTAAATGTGGGGCTGTTGATGAGGTCGAGAAGGTCTTCGAAGAAATTAGAGAGAAGAATGTGTATACATGGAATGTCTTGATTTCTGGATATGCCATGAATGGGCAAGGCGATGCAGCTTTACAGGCTTTTTCTAGGATGTTGATGGAAAATTTCAAGCCAGATGAAGTTACCTTTCTAGGTGTTTTGTGTGCATGCTGTCACCAAGGTCTGGTAACGGAAGGGCGCAGGCAATTCATGAGCATGAAACAGCAGTTTGGACTGCAACCAAGGATAGAGCATTATGGATGTATGGTTGACCTACTTGGTCGAGCGGGATTGTTGGAGGAAGCTCTAGAGTTGATCCAATCCATGAGCATGGAGCCAGACCCTATCATTTGGAGGGCTTTGCTTTGTGCTTGCAGAGTCCATGGGAATACGAAATTGGGTGAATATATTATGAAACGACTTGTAGAACTAGAACCAAACAATGGGGAAAATTATGTCTTGCTGTCAAATATATATGCAAGGGAACGACGGTGGGCTGAAGTAGGGAAGTTGAGGGGAATGATGAATCTAAGAGGGATCAGAAAAGTCCCTGGTTGCAGTTCAATTGAAATAAACAATGTAGTTTATGAGTTTGTTGCATCAAATGACAGAAAACCAGAATATGAGGCAATATACAAGCAGTTGGATAATTTGATTAAGAAATTGAAAGAAAATGGTTATGTTACAGGCACGGACATGGCTTTATATGATGTTGAGAAAGAAGAGAAAGAGCATTCTCTGATGTACCATAGTGAGAAACTTGCTTTAGCATTTGGTCTCTTAAACTCTCCTTTAGATTGCACCCTAAGGATAGTGAAAAATCTAAGAATTTGCTTGGACTGCCACGAGTTTTTCAAGGTTGTATCACTTGTCTATAAAAGATATATTGTTGTGAGAGACAGAAACCGTTTCCACCATTTCTTTGAAGGTTTCTGTTCGTGCCGAGACTATTGGTGA 1689 39.96 MDLPFQETNDRKTPDYNDVRRGHFVMKLIDDSVSHNGFESIARIFSKYRGSINSQQCNSMIRRYLDLNKHLNSLYIFAQMHKFSILPDLSTFPAVLKATAQLCDTEVGKMIHGIVIQMGFICDVYTSTALVHMYSTCLSISDASQVFDEMAERNAVTWNALITGYTHNRKFMEAIDAFRGMLAAGAQPSERTVVLVLSACSHLGALNQGKWIHDFIYHNRLRLNVFVGTALIDMYAKCGAVDEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRRQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSMEPDPIIWRALLCACRVHGNTKLGEYIMKRLVELEPNNGENYVLLSNIYARERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEYEAIYKQLDNLIKKLKENGYVTGTDMALYDVEKEEKEHSLMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVVSLVYKRYIVVRDRNRFHHFFEGFCSCRDYW 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25198486 25200174 - MELO3C029755.2.1 Cme02g01854 321743

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01854 562 Pfam PPR repeat 329 354 IPR002885 -
Cme02g01854 562 Gene3D Tetratricopeptide repeat domain 169 294 IPR011990 GO:0005515
Cme02g01854 562 TIGRFAM PPR: pentatricopeptide repeat domain 330 354 IPR002885 -
Cme02g01854 562 TIGRFAM PPR: pentatricopeptide repeat domain 156 189 IPR002885 -
Cme02g01854 562 TIGRFAM PPR: pentatricopeptide repeat domain 257 291 IPR002885 -
Cme02g01854 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 255 289 IPR002885 -
Cme02g01854 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 154 188 IPR002885 -
Cme02g01854 562 Pfam DYW family of nucleic acid deaminases 470 562 IPR032867 GO:0008270
Cme02g01854 562 Coils Coil 449 469 - -
Cme02g01854 562 SUPERFAMILY TPR-like 239 411 IPR011990 GO:0005515
Cme02g01854 562 Pfam PPR repeat family 254 303 IPR002885 -
Cme02g01854 562 Pfam PPR repeat family 154 201 IPR002885 -
Cme02g01854 562 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 38 536 - -
Cme02g01854 562 PANTHER - 38 536 - -
Cme02g01854 562 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 224 254 IPR002885 -
Cme02g01854 562 Gene3D Tetratricopeptide repeat domain 16 152 IPR011990 GO:0005515
Cme02g01854 562 Pfam E motif 372 434 IPR046848 -
Cme02g01854 562 Gene3D Tetratricopeptide repeat domain 295 457 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01854 - - - csv:101215826 1081.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01854 Cme-Chr2:25198486 Cme02g01246 Cme-Chr2:17991713 5.34E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g607 . . . . Bpe12g00530 . . . . . . Cma11g00119 . . . . . Bhi02g00283 . . . . . . Cla06g01564 . . . . . . . . . . . . . . . . . . . . . . . . Cmo11g00193 . . . Car18g00007 . . . . . . . . . . . . . . . . Lsi06g01438 Csa01g00268 Chy02g02467 Cme02g01854
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012910 0 1 1 0 1 1 0 1 1 1 1 1 1 1 0 1 1 0 0 1 1 1 0 0 0 1 1 0 0 1 19