Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01857 ATGAAGGAGAAAGACACTGATAATCAATCATGGCATCTTCCAATTCTCATTTTCTTCATCTTAATCACAGGTAGAATTGTTGAGGGACAAGAATTGTTGAGAGATAGAGAAGTTTTGTTACAGTTGAAATCATTTTTAGAAGAACACAATCCCATTAAACGAGGGAAATATTCGTTTTGGAATTTGGAGAGTTCACCTTGTTCTTGGTCTGGAATATCCTGTAATCAGAACAAATCCCAAGTCATCGGAATTGACCTTTCAAACGAAGATATTTCCGGCAAAATTTTTCATAATTTCTCTGCTTTGTCGGAGTTGACGGACCTTGACCTCTCTAGAAACACTCTCTCCGGCGGAATTCCCGGCGACTTGAACAACTGCAGAAATCTACGGAAACTGAATTTGTCACACAACATCATCGACGACAAGTTGAATTTGTCGGGTTTGGTCAATATCGAGACTCTGGATTTGTCGGTCAACCGAATTTGGGGAGAAATAAGGTTGAATTTTCCAGGCATTTGCCGAAATTTGATGTTCTTTAATGTTTCTGGTAATAATCTCACTGGTCGGACGGATGACTGTTTTGATGAGTGCCGGAATTTGCAACACGTGGATTTAAGCTCCAACGAATTCAGTGGAGGATTGTGGGGTGGGTTGGCGAGGACTCGGTTTTTTTCGGCGTCGGAGAATAAACTTTCCGGCGAAGTTTCGCCGGCGATGTTTACAGGGGTTTGTAATTTGGAGGTTTTGGACTTGTCAGAGAATGCGCTTTTCGGAGGAGCTCCGGCGGAGGTTTCCAATTGTGGGAATTTATCTTCTTTGAATCTGTGGGGGAACCAATTTTCCGGGAAGATTCCGGCGGAAATAGGAAGAATTTCGGGTTTGCAGAATTTGTATCTAGGAAAGAACAAATTTTCTCGGGAAATTCCAGAATCCCTTTTGAATTTGAGCAATTTGGTGTTTCTTGATTTGAGCAAGAACAATTTCGGAGGGGACATTCAAGAGATTTTCGGAAGGTTTACACAGGTGAGATTTCTTGTTCTTCATGGGAATTTTTACACTGGAGGGATTCATTCTTCTGGGATTCTTAAGTTGCCAAGAGTTGCTCGTTTGGATTTGAGTTTCAACAACTTTTCAGGTCCATTGCCTGTGGAAATCTCTGAAATGAAGAGCTTGGAGTTCTTGATTCTTGCATATAATCAGTTCAATGGAAACATTCCATCAGAATATGGGAACTTGAAGAATCTTCAAGCTCTTGACCTTTCATTCAACAGCTTAAATGGGTCAATCCCAAGAAGCTTTGGGAACTTGACTTCACTCTTGTGGCTAATGCTGGCAAACAACTCTTTGACAGGTGAAATTCCCAGGGAGCTAGGCAATTGTTCTAGCTTGTTGTGGTTGAACCTTGCCAACAATAAGCTACATGGGCGCATCCCGTCTGAGCTAGCGAACATTGGAAAAAATGCCACGGCGACATTCGAAATGAACCGACAAACTGAAAAGTTTATTGCTGGATCAGGGGAATGCTTGGCAATGAAGAGATGGATTCCAGTAGACTACCCTCCTTTCAGCTTTGTCTACACAATCCTTACAAGGAAGAGTTGTAGAAGCATTTGGGATAGATTGTTGAAAGGGTATGGCCTTTTCCCATTTTGCAGCAAAATAAGGACATTGCAGATCTCTGGCTATGTTCAACTGACTGGGAATCAGTTCAGTGGTGAGATACCAAATGAGATTGGAAGAATGAAAAACTTCAGTATGTTGCATTTGAGTTTCAACAATTTCAGTGGGAAACTCCCTCCACAGTTGGGAAATCTGCCATTGGTTGTTCTAAACGTATCGGACAACAATTTTTCAGGCGAGATCCCGACGGAGATTGGAGACCTCAAGTGCTTACAGAATCTTGATTTATCATACAACAATTTCTCTGGCATGTTCCCTGGAAGTTTTGTCAACTTGAATGAGCTTAACAAGTTCAACATCTCATACAATCCTCTCATAACTGGGGAAGTAATTCCAAGTGGGCAATTCTCAACGTTCGACAAGGACTCGTATCTCGGCAATCCTCTTTTGCGCCTTCCTTCTTTCTTCAACACAACCCCACCTAAGTCACCAGGCAACCCAAGAACGGCAGGATCATCGAAAAGGAATTCAAGGCTAGTTGGAATGTTGGCTTCTTTATCATTGATCCTTGCTTTTTTGGTATTTGGTACATTTTCTCTTATAGTTTTCTTAATGGTGAGAAGCTCAGATGAATCACGAGGATTTCTCTTGGAAGATATAAAGTATATAAAAGACTTTGGTTCAAGTTCTCAAGGCTCATCCCCATGGTTTTCGAATACGGTTACGGTCATTCGTCTCGACAAGACGGTTTTTACACATGCTGATATTCTAAAAGCCACTGGAAACTTTTCAGAGGATAGGGTGATTGGTAAAGGAGGATATGGAACAGTTTACAGAGGAATGCTACCTGATGGAAGGCAAGTGGCAGTGAAGAAGCTTCAAAGAGAAGGAGTTGAAGGTGAAAGAGAGTTCCAAGCTGAAATGCAAATTCTTACTGGCAATGGCTTCAACTGGCCGCACCCAAACCTTGTTCAACTTTACGGATGGTGTCTTGATGGATCGGAGAAGATTTTGGTCTATGAATACATGGAAGGAGGGAGCTTGGACGATCTTATTCTAGACAGACTCAGACTAAACTGGCGACGACGCATTGATCTTGCAATCGATGTGGCGCGAGCATTGGTCTTTCTGCACCATGAGTGTTTCCCCTCAGTTGTGCATCGTGATGTTAAGGCCAGTAATGTTTTGCTCGACAAAGACGGACGAGGACGGGTGACAGACTTCGGCTTGGCTAGAATTATGGATGTAGGAGACAGCCATGTGAGTACCATGGTGGCTGGAACTATTGGTTATGTAGCACCCGAATATGGACAAACATGGAAAGCTACAACAAAGGGCGATGTGTATAGTTTTGGAATTTTAGCCATGGAACTTGCTACAGCGAGACGAGCACTTGACGGAGGGGAAGAGTGTCTAGTTGAATGGGCTAAAAGGGTGATGGGAAATGGAAGACATGGGTTGAGTAGAGCAGTAATACCGGTTGCAGTTTTGGGGTCAGGCCTTGTCGAGGGGGCCGACGAGATGTGCGAGCTGCTCAAGATTGGGGTAAGGTGCACAAACGAAGCACCATCGGCAAGACCGAATATGAAGGAAGTTCTAGCTATGTTGATCAACATCATAGGCTTAAGAGGGGGGGATGAATTCAAACACATCTTCTCCCCTCCATCCTTGTGA 3294 43.14 MKEKDTDNQSWHLPILIFFILITGRIVEGQELLRDREVLLQLKSFLEEHNPIKRGKYSFWNLESSPCSWSGISCNQNKSQVIGIDLSNEDISGKIFHNFSALSELTDLDLSRNTLSGGIPGDLNNCRNLRKLNLSHNIIDDKLNLSGLVNIETLDLSVNRIWGEIRLNFPGICRNLMFFNVSGNNLTGRTDDCFDECRNLQHVDLSSNEFSGGLWGGLARTRFFSASENKLSGEVSPAMFTGVCNLEVLDLSENALFGGAPAEVSNCGNLSSLNLWGNQFSGKIPAEIGRISGLQNLYLGKNKFSREIPESLLNLSNLVFLDLSKNNFGGDIQEIFGRFTQVRFLVLHGNFYTGGIHSSGILKLPRVARLDLSFNNFSGPLPVEISEMKSLEFLILAYNQFNGNIPSEYGNLKNLQALDLSFNSLNGSIPRSFGNLTSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLHGRIPSELANIGKNATATFEMNRQTEKFIAGSGECLAMKRWIPVDYPPFSFVYTILTRKSCRSIWDRLLKGYGLFPFCSKIRTLQISGYVQLTGNQFSGEIPNEIGRMKNFSMLHLSFNNFSGKLPPQLGNLPLVVLNVSDNNFSGEIPTEIGDLKCLQNLDLSYNNFSGMFPGSFVNLNELNKFNISYNPLITGEVIPSGQFSTFDKDSYLGNPLLRLPSFFNTTPPKSPGNPRTAGSSKRNSRLVGMLASLSLILAFLVFGTFSLIVFLMVRSSDESRGFLLEDIKYIKDFGSSSQGSSPWFSNTVTVIRLDKTVFTHADILKATGNFSEDRVIGKGGYGTVYRGMLPDGRQVAVKKLQREGVEGEREFQAEMQILTGNGFNWPHPNLVQLYGWCLDGSEKILVYEYMEGGSLDDLILDRLRLNWRRRIDLAIDVARALVFLHHECFPSVVHRDVKASNVLLDKDGRGRVTDFGLARIMDVGDSHVSTMVAGTIGYVAPEYGQTWKATTKGDVYSFGILAMELATARRALDGGEECLVEWAKRVMGNGRHGLSRAVIPVAVLGSGLVEGADEMCELLKIGVRCTNEAPSARPNMKEVLAMLINIIGLRGGDEFKHIFSPPSL 1097
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25211219 25215461 - MELO3C017200.2.1 Cme02g01857 321746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01857 1097 Pfam Protein kinase domain 804 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01857 1097 SUPERFAMILY L domain-like 218 479 - -
Cme02g01857 1097 Gene3D Ribonuclease Inhibitor 215 360 IPR032675 -
Cme02g01857 1097 Gene3D Ribonuclease Inhibitor 361 510 IPR032675 -
Cme02g01857 1097 SMART serkin_6 803 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01857 1097 PANTHER LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KINASE FAMILY PROTEIN-RELATED 15 1085 - -
Cme02g01857 1097 SUPERFAMILY Protein kinase-like (PK-like) 783 1076 IPR011009 -
Cme02g01857 1097 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Cme02g01857 1097 Gene3D Ribonuclease Inhibitor 546 703 IPR032675 -
Cme02g01857 1097 Gene3D Phosphorylase Kinase; domain 1 769 882 - -
Cme02g01857 1097 ProSiteProfiles Leucine-rich repeat profile. 128 149 IPR001611 GO:0005515
Cme02g01857 1097 PRINTS Leucine-rich repeat signature 105 118 - -
Cme02g01857 1097 PRINTS Leucine-rich repeat signature 412 425 - -
Cme02g01857 1097 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 15 1085 - -
Cme02g01857 1097 Pfam Leucine rich repeat 97 137 IPR001611 GO:0005515
Cme02g01857 1097 Pfam Leucine rich repeat 414 473 IPR001611 GO:0005515
Cme02g01857 1097 Pfam Leucine rich repeat 607 665 IPR001611 GO:0005515
Cme02g01857 1097 ProSiteProfiles Protein kinase domain profile. 803 1093 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01857 1097 SUPERFAMILY RNI-like 67 287 - -
Cme02g01857 1097 ProSitePatterns Protein kinases ATP-binding region signature. 809 832 IPR017441 GO:0005524
Cme02g01857 1097 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Cme02g01857 1097 SUPERFAMILY L domain-like 547 667 - -
Cme02g01857 1097 ProSitePatterns Serine/Threonine protein kinases active-site signature. 925 937 IPR008271 GO:0004672|GO:0006468
Cme02g01857 1097 CDD STKc_IRAK 809 1079 - -
Cme02g01857 1097 SMART LRR_typ_2 102 126 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 291 315 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 364 388 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 436 460 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 243 267 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 412 435 IPR003591 -
Cme02g01857 1097 SMART LRR_typ_2 628 651 IPR003591 -
Cme02g01857 1097 Gene3D Transferase(Phosphotransferase) domain 1 883 1083 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01857 - - - csv:105436350 2105.49
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01857 Cme-Chr2:25211219 Cme08g00469 Cme-Chr8:2878546 4.16E-153 dispersed
Cme02g01857 Cme-Chr2:25211219 Cme05g00654 Cme-Chr5:7055603 2.72E-132 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g601 . . . Bda15g00614 Bpe12g00532 . . . . . Cma10g00211 . Car10g00198 . . . . Bhi02g00285 . . . . . . Cla06g01566 . . . . . . Cone2ag0823 . Cone13ag0052 . . . . . . . . . . . . . . . . . . . . . Cpe18g00778 . . . . . . . . . . . . . . Lsi06g01441 Csa01g00264 Chy02g02469 Cme02g01857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007471 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 2 1 2 2 1 2 3 2 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64706 PF00069 Pkinase 2.70E-42 CL0016 Cme PK