Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01864 ATGGCCATGTCTGAACCTTCACCCAGTTTGTCCCTGGATTCTCTCGGCGACATCGATGACTACATTTGGGCCAATGAAGGAGAGGGTTCATTGCCATGGGACATGTTCAGGGATGTTTTTGAATTTGTACAAAATGGGAATCAAGCATTTAAAAACAATCACTTTGAAGAGGCAATCAAGTATTACTCAAGAGCTAATAACATCAAGCCAGGTGATCCAGTTATTCTCAACAATAGAAGTGCTGCTTATATCAGGATTAGTCAGTTCCTGAAAGACAGACCACCAGCCGCTTCTGAATATCGACCATTAAATGGGTTGGATCCTACAGTACATGCTGAGCTTGCACTAAAAGATGCTGAGAAGCTGATGGACCTACGCGGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATGCTCCTAGAAAAATATGCCATGGCAAAGGATATTATTCTTTCTGGCCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGAATAGCTGCTACTGTGATGGGAAAAGGACTCCATGGGCTACCCGATCGTAGTGATGACTTTGATTGCACCCTTTGTCTTAAGCTTCTTTATGAACCCATCACCACTCCTTGTGGGCATTCTTTCTGCCGTTCCTGCTTATTTCAGTCTATGGATCGTGGTAATAAATGTCCCTTGTGCAGAACAGTTCTTTTTATCAGTTCAAGAACATGTTCGATCAGTGTTACACTGAGCAACATTATACAGAAGAACTTTCCAGAGGAATATGCTGAAAGAAAGTCAGAACATGAGGGTTTAACAAATTTTGGTGTCGATTTAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTTCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCAGGAGGGTAATGGAAGGCAATCATCGTATGGGAATGGTTATAGTGGATTCTACAACTGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACGGAGTGTGAGCCACTTGCGGATGGACGTTTTTATCTAGAGATTGAAAGTCGTAGAAGATTTCGCATTCTTCGATCTTGGGATCAAGATGGATATCGAGTGGCAGAGATCGAATGGGTCAATGATATAACTCCCCCGGAAGGGACAATAGAGCGGACAGAACTGCAGGAAATGACAATTAACGCAGCAGAGTATGCTCAGTCATGGATAAGGAGGGCAAAAGAAGCATCTAGACGAGATCCAATAAAACGGGATCGACTTCTTAACGTGGAAGCAATGATGCCCTCATCACGAGATCCTGAACGGTTTAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAGAGAGAGGATAAGGCGTGGACTTGTATATCTCAAAGCAGAAGAACAGGGCTGTCAGATGCATAAACTTCTTCTGGCGGTGGCGATGGGAGGAGAACTTTCCGGGGCTCCAACCCCTCGAATCCCCTTCTCCTCCCTTCTCCTTTTCTTCCTTCTCTCTGCCACTCTCTCTGCCGCCAAAAACCCCTTATTCCCTGCCTTCACCCCTCGCGACGTTTATCTCATCGACTGCGGTTCCCCTTCCCAAACCCGTCTCGACGACGCCCGCATTTACAAATCCGATCGCGAATCCACTTCTCTTCTTTCCACCGAAGAAGACATTCAAGCCTCTGTCGATTCCATTCCCTCAAACGCCCTCGTTTCCCCTCTCTCTTCTTGGTCATTACCTCTTTTTCTCACCGCTAGAATTTTCCCTACCGATTCCACCTACACTTTCTTCATTTCTCAACCTGGACGCCATTGGATCCGCCTCTACTTTTATCCTCTCCCTAATTCTAATTTCAATCTCACCGATTCCGTTTTCACCGTCACCACAGACTCCGTCGTTCTCCTCCATGATTTCTCAATCAAACCTAATCCCAAAATCGTTTTCAAAGAATACCTAATCAACATCACCACCGCTCGATTTTCCCTCCAATTCAAACCTAAGAAGAATTCCTTCGCCTTCATCAATGCTATCGAAATCGTCTCCGCTCCAGATGCTCTGTTTTCCGATTCCGCTAACTCTGTTTCTCCGGTGGGATTTTTCAACGGATTGTCCAACATTGCTTTGCAAATTTGCTACCGTGTTAATGTGGGTGGCCCTGAAATTGTTCCTAAAAAGGACACGTTGTCAAGAACATGGGAAACCGATGATGGTTACAACAAATTTCCACAGGGTTCGAAGAATGTTTCTGTGGATTTGGACTCGATTAAATACCCTGGAATTGAATTGACTCCATTGATTGCTCCTAATTGGGTTTATGCAACTGCTGAGGACATGCAAGATCCTAAAACGATGCAAGTGAATTTCAATATGAGTTGGAGTTTCAATGTGGAACAGAGTTACTCGTATTTGATTAGACTCCATTTTTGTGATATTGTGAGCAAAGTTCTGAATAACTTGTACTTCAACGTGTACATTAATGGGATGATGGGTATTGCTGATCTTGATCTCTCTCAACTCACCGGTGATCTTTCTACTCCCTACTACAGAGACCTCGTTCTTAATGCCTCCGACATTAAGAACAACACCATCATGATTCAGGTTGGTCCATCAAATGTGGAGTCAGGGCTACAAGATGCAATCCTAAATGGAGTGGAAATCATGAAGATGAGTAACGCTGCACAAAGCTTGGACGGCTTATTTTCAGTGGATGGAACCTACATGGGAGGCTCAACACTTAGCACAATGAAGATAATTGCAGTTGTGGGACTTGTAATCGGAGCCATTGCCATTGTTTTCCTTGGTGTTATGTTCTTGAGATGGCAAAACAGACCAAATGGATGGGAAAAGAAACACAGTTTCTCTTCATGGCTTCTTCCTTTGAATAATAATAATTCAACTAACACTGCCAGTTTCTTCTCTTCTAAAAGCAGTTCTAGAAGATCATCAACCGTTTTTAGCTCTCGCCGAAGCAGAACTGGCTTCTCCGGTATCTACTCCAATGTTGGTCTCGGCCGTTTCTTCTCCCTCAACGAGCTACAGGTTGCTACACAAAATTTCGACGAGAAAGCAGTGATCGGCGTCGGTGGATTCGGCAAAGTCTACGTCGGAGCATTAGAAGATGGAACAAAAGTCGCGATTAAACGTGGAAACCCTAGTTCCGATCAAGGCATTAACGAGTTCAGAACCGAGATCGAAATGCTCTCTAAACTCCGCCATCGCCATCTGGTTTCTCTAATCGGTTTCTGCGACGAACAATCCGAGATGATTCTGGTTTACGAATACATGGCCAATGGCCCATTTCGCGACCATTTGTATGGCTCTAATCTCCCTCCTCTGTCCTGGAAACAGAGGCTCGAAATCTGCATCGGCGCTGCTCGTGGCCTTCATTATCTCCACACTGGTGCGGCTCAGGGCATAATCCACCGTGATGTTAAGACCACTAACATTCTGCTTGATGAAAATTTTGTTGCTAAAGTTGCCGATTTTGGGCTTTCCAAAGCTGCACCATCCTTGGAACAGACCCATGTTAGCACTGCAGTTAAAGGAAGTTTTGGTTATCTCGATCCTGAGTACTTTAGACGACAGCAACTAACTGAGAAATCTGATGTTTACTCATTTGGGGTTGTTCTTTTTGAGGTTCTATGTGCAAGACAAGTCATCAATCCCACGTTGCCTCGTGAGCAGGAGTTTCTAATCAGAGACCGAGCGGCTATAATAGGCCACTCCATTCAAAGCAAGTTGAGGGCCCAAACGCCCTCTAAAAGGCTTAGAACAGTAGCGCAGGTAAACTTGGCCGAGTGGGCAATGCAGAATTACAGAAAAGGAAAACTAGACAAGATAATTGATCCTCAAATTAGCAGCTCAATTGTAGAAGGGTCACTGAAGAAATTTGTGGAAGCAGCCGAGAAATGCTTGGGTGAATATGGGGTTGATAGGCCAAGCATGGGAGATGTTCTATGGAACTTGGAATACGCTTTGCAACTACAAGAGGCAGTATCAGAGCTCGAGGACCCTGATGAAGACAAATGTGAAGGCCTTGTGGCTTTGGACAAACCAAATGACAATAAACCAAAAGAAGAAACAACAAGTGCTTCTGTAAGTGATGATACTTCTGAAGTTTCAGTTAGTGCTCCTTTGTTTTCTGAAGTTCAAAATTTTCAAGGAAGGTGA 4215 44.1 MAMSEPSPSLSLDSLGDIDDYIWANEGEGSLPWDMFRDVFEFVQNGNQAFKNNHFEEAIKYYSRANNIKPGDPVILNNRSAAYIRISQFLKDRPPAASEYRPLNGLDPTVHAELALKDAEKLMDLRGKSVKPYILKANALMLLEKYAMAKDIILSGLQIDPLSNPLQASLQRLERIAATVMGKGLHGLPDRSDDFDCTLCLKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCSISVTLSNIIQKNFPEEYAERKSEHEGLTNFGVDLMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRILRSWDQDGYRVAEIEWVNDITPPEGTIERTELQEMTINAAEYAQSWIRRAKEASRRDPIKRDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRERIRRGLVYLKAEEQGCQMHKLLLAVAMGGELSGAPTPRIPFSSLLLFFLLSATLSAAKNPLFPAFTPRDVYLIDCGSPSQTRLDDARIYKSDRESTSLLSTEEDIQASVDSIPSNALVSPLSSWSLPLFLTARIFPTDSTYTFFISQPGRHWIRLYFYPLPNSNFNLTDSVFTVTTDSVVLLHDFSIKPNPKIVFKEYLINITTARFSLQFKPKKNSFAFINAIEIVSAPDALFSDSANSVSPVGFFNGLSNIALQICYRVNVGGPEIVPKKDTLSRTWETDDGYNKFPQGSKNVSVDLDSIKYPGIELTPLIAPNWVYATAEDMQDPKTMQVNFNMSWSFNVEQSYSYLIRLHFCDIVSKVLNNLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASDIKNNTIMIQVGPSNVESGLQDAILNGVEIMKMSNAAQSLDGLFSVDGTYMGGSTLSTMKIIAVVGLVIGAIAIVFLGVMFLRWQNRPNGWEKKHSFSSWLLPLNNNNSTNTASFFSSKSSSRRSSTVFSSRRSRTGFSGIYSNVGLGRFFSLNELQVATQNFDEKAVIGVGGFGKVYVGALEDGTKVAIKRGNPSSDQGINEFRTEIEMLSKLRHRHLVSLIGFCDEQSEMILVYEYMANGPFRDHLYGSNLPPLSWKQRLEICIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKAAPSLEQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARQVINPTLPREQEFLIRDRAAIIGHSIQSKLRAQTPSKRLRTVAQVNLAEWAMQNYRKGKLDKIIDPQISSSIVEGSLKKFVEAAEKCLGEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPDEDKCEGLVALDKPNDNKPKEETTSASVSDDTSEVSVSAPLFSEVQNFQGR 1404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25266955 25280818 - MELO3C017192.2.1 Cme02g01864 321753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01864 1404 PANTHER OS03G0759600 PROTEIN 527 1379 - -
Cme02g01864 1404 Gene3D Phosphorylase Kinase; domain 1 1002 1109 - -
Cme02g01864 1404 SUPERFAMILY Protein kinase-like (PK-like) 1008 1338 IPR011009 -
Cme02g01864 1404 SUPERFAMILY RING/U-box 190 258 - -
Cme02g01864 1404 SMART lon_5 280 479 IPR003111 -
Cme02g01864 1404 CDD RING2-HC_LONFs 194 235 - -
Cme02g01864 1404 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Cme02g01864 1404 CDD STKc_IRAK 1040 1338 - -
Cme02g01864 1404 ProSiteProfiles Lon N-terminal domain profile. 278 479 IPR003111 -
Cme02g01864 1404 MobiDBLite consensus disorder prediction 1381 1404 - -
Cme02g01864 1404 Gene3D Transferase(Phosphotransferase) domain 1 1110 1359 - -
Cme02g01864 1404 Gene3D - 536 698 - -
Cme02g01864 1404 Gene3D - 721 906 - -
Cme02g01864 1404 Gene3D Tetratricopeptide repeat domain 38 181 IPR011990 GO:0005515
Cme02g01864 1404 Pfam ATP-dependent protease La (LON) substrate-binding domain 281 478 IPR003111 -
Cme02g01864 1404 SMART serkin_6 1034 1340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01864 1404 MobiDBLite consensus disorder prediction 1352 1404 - -
Cme02g01864 1404 Pfam Malectin-like domain 541 904 IPR024788 -
Cme02g01864 1404 MobiDBLite consensus disorder prediction 1357 1380 - -
Cme02g01864 1404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1154 1166 IPR008271 GO:0004672|GO:0006468
Cme02g01864 1404 ProSiteProfiles Protein kinase domain profile. 1034 1340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01864 1404 SMART tpr_5 130 163 IPR019734 GO:0005515
Cme02g01864 1404 SMART tpr_5 39 72 IPR019734 GO:0005515
Cme02g01864 1404 PANTHER OS07G0166700 PROTEIN 527 1379 IPR045272 GO:0004714|GO:0006468
Cme02g01864 1404 Pfam Zinc finger, C3HC4 type (RING finger) 197 234 - -
Cme02g01864 1404 SMART ring_2 197 234 IPR001841 -
Cme02g01864 1404 SUPERFAMILY PUA domain-like 281 477 IPR015947 -
Cme02g01864 1404 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Cme02g01864 1404 Gene3D - 280 381 IPR046336 -
Cme02g01864 1404 ProSitePatterns Protein kinases ATP-binding region signature. 1040 1062 IPR017441 GO:0005524
Cme02g01864 1404 Pfam Protein tyrosine and serine/threonine kinase 1038 1280 IPR001245 GO:0004672|GO:0006468
Cme02g01864 1404 ProSiteProfiles Zinc finger RING-type profile. 197 235 IPR001841 -
Cme02g01864 1404 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 276 IPR013083 -
Cme02g01864 1404 SUPERFAMILY TPR-like 42 174 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g01746 Cme-Chr1:24460845 Cme02g01864 Cme-Chr2:25266955 8.77E-06 dispersed
Cme01g02660 Cme-Chr1:34060666 Cme02g01864 Cme-Chr2:25266955 0 dispersed
Cme02g01864 Cme-Chr2:25266955 Cme04g00708 Cme-Chr4:8164056 0 dispersed
Cme04g00513 Cme-Chr4:4226265 Cme02g01864 Cme-Chr2:25266955 2.65E-18 dispersed
Cme06g01852 Cme-Chr6:21810754 Cme02g01864 Cme-Chr2:25266955 2.91E-16 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64707 PF12819 Malectin_like 4.10E-36 CL0202 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01864 - - csv:101204351 2490.3