Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01876 ATGGCGTTTCTTGGACTTCTCTTGGTGGGTCTTCTTCTATCTTTGGGATGTGATTCTGCTCCTACCAACCACAATGGAGGTGGTTGGACTAGTGCCCACGCCACATTCTACGGTGGGGGTGACGCCGCTGGTACAATGGGAGGGGCTTGTGGCTATGGAAATCTGTACAGCCAGGGATATGGGACGAACACAGCAGCTCTGAGCACAGCTTTATTCAACAATGGACTGAGTTGTGGCGCTTGCTTTGAAATCAAATGTGTAAGTGACCCAAAATGGTGTCTTCAAAAGTCCATTGTGGTTACTGCCACAAACTTTTGTCCACCAAACAATGCGCTCCCAAACAACGCCGGCGGCTGGTGTAACCCTCCCCAACACCATTTCGATCTCTCCCAACCCGTCTTCGAACAAATCGCTCGTTTCAAAGCCGGCATTGTCCCAGTGGCATACAGAAGGGTATCTTGTGAGAAGAAAGGAGGCATTAGATTCACAATCAATGGCCATTCGTACTTCAATTTAGTCCTTGTAACCAACGTCGGTGGAGGTGGGGATGTTCATGGTGTGTGGATTAAAGGGTCGAAAACAGGGTGGGAAGCAATGTCGAGGAATTGGGGACAGAATTGGCAGAGCAATTCATACCTGAATGGACAAAGCTTATCGTTCAAAGTGACCACCGGCGATGGCCGAACAGTGATATCCAACAACGTAGCGCCATCTGAGTGGAGCTTTGGTCAGACTTTTAGTGGGTCGCAATTCCAATGA 759 49.14 MAFLGLLLVGLLLSLGCDSAPTNHNGGGWTSAHATFYGGGDAAGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVSDPKWCLQKSIVVTATNFCPPNNALPNNAGGWCNPPQHHFDLSQPVFEQIARFKAGIVPVAYRRVSCEKKGGIRFTINGHSYFNLVLVTNVGGGGDVHGVWIKGSKTGWEAMSRNWGQNWQSNSYLNGQSLSFKVTTGDGRTVISNNVAPSEWSFGQTFSGSQFQ 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25344916 25346661 + MELO3C017181.2.1 Cme02g01876 321765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01876 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Cme02g01876 252 SUPERFAMILY PHL pollen allergen 156 247 IPR036749 -
Cme02g01876 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Cme02g01876 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Cme02g01876 252 PANTHER EXPANSIN-A15 8 251 IPR002963 GO:0009664
Cme02g01876 252 PANTHER EXPANSIN 8 251 - -
Cme02g01876 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Cme02g01876 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Cme02g01876 252 SMART dpbb_1 64 149 IPR007112 -
Cme02g01876 252 Gene3D - 156 252 IPR036749 -
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Cme02g01876 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Cme02g01876 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
Cme02g01876 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cme02g01876 252 Gene3D - 15 155 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01876 Cme-Chr2:25344916 Cme05g00939 Cme-Chr5:12976236 2.39E-134 dispersed
Cme06g02122 Cme-Chr6:26871468 Cme02g01876 Cme-Chr2:25344916 3.39E-79 transposed
Cme10g00403 Cme-Chr10:2578552 Cme02g01876 Cme-Chr2:25344916 1.46E-139 wgd
Cme12g01981 Cme-Chr12:25595789 Cme02g01876 Cme-Chr2:25344916 4.87E-96 wgd
Cme02g01876 Cme-Chr2:25344916 Cme09g00257 Cme-Chr9:1954077 5.88E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01876 - - csv:101222936 473.781