Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01878 ATGAGGCGAAGCAAGGAATCGAAGAAGAAAACTCGCCCCTCGTCACCGCTCAGGGACCGAACTGGTGCTCCAACAAGTCTCGAATCGACGCGTTATGGGTCTCACCCATCAAGCCTCAGCCCCTCTGCATCCCTTCTGGACCGGGACCTCGTCACCGGCGAATCCAATCTCCTCGGAGACCTAAAATTCTCTCCCAATGACTCAGTTTCCAACTACAATCCCCGGAGCTTTCCTCATAGTGTGAAGCAGCAATGTTGGGATAAGGCCGAGAAGATTAAAGGAAGAGACCCAGATCGCTGGCGACGGGATGCTCTTGGTAACACTGTTTTTCGAAAGCTTGTTGGCTGCCCCGGTTGTCTCTGTCATGACTATGATCACATTTTGCCTTACTCTAAGGGAGGAAAGAGCACACTAGAAAATTGTCAGGTTTTGCAGGCAACTGTGAATCGATCAAAGGGAAACCGGACAGAAATTTCGAGGGCAGAACTAATACAGAAAAGCTCTTACTGCCGGGTTTCAGGTCGAGACATGGATCTTCTTGAACTATCTGCCTATGGCAATGTACATCGTGGACAAGACTCAGGAGGCTGTAGAATTCAATGA 603 49.59 MRRSKESKKKTRPSSPLRDRTGAPTSLESTRYGSHPSSLSPSASLLDRDLVTGESNLLGDLKFSPNDSVSNYNPRSFPHSVKQQCWDKAEKIKGRDPDRWRRDALGNTVFRKLVGCPGCLCHDYDHILPYSKGGKSTLENCQVLQATVNRSKGNRTEISRAELIQKSSYCRVSGRDMDLLELSAYGNVHRGQDSGGCRIQ 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25350691 25353739 + MELO3C017179.2.1 Cme02g01878 321767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01878 200 PANTHER HNH ENDONUCLEASE 5 200 - -
Cme02g01878 200 Pfam HNH endonuclease 122 155 IPR002711 GO:0003676|GO:0004519
Cme02g01878 200 MobiDBLite consensus disorder prediction 1 46 - -
Cme02g01878 200 PANTHER HNH ENDONUCLEASE 5 200 - -
Cme02g01878 200 Gene3D - 79 172 - -
Cme02g01878 200 MobiDBLite consensus disorder prediction 18 45 - -
Cme02g01878 200 CDD HNHc 109 153 IPR003615 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01878 - - - csv:101222461 392.889
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01860 Cme-Chr2:25231195 Cme02g01878 Cme-Chr2:25350691 3.23E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g563 . . . Bda15g00607 Bpe12g00542 . . . . . . Cma11g00140 . Car11g00155 . . Cpe04g01496 . . . . . . . Cla06g01587 Cam06g1756 Cec06g1812 Cco06g1815 Clacu06g1722 Cmu06g1665 Cre06g2479 . . . . . . . . Blo13g00005 . . . . . . Bma08g00225 . . Cmo11g00171 . . . . . . . . . . . . . . . . . . . . . Csa01g00240 Chy02g02492 Cme02g01878
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005290 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 6 5 1 40