Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01890 ATGGAAGGAGGTGATGAACTTCACCACCATCATCACCATCACCACCAGAATCACCACCACCAACAGCACCACCAACACCGTCCTACTTTCCCATTTCAATTACTTGAAAAGAAAGATGAGGATGCTGCCTCTTGCTCCACTTCTCCTTACCCTTCTCTTGCTATCTCTGCCGACACGGCTACTACGACCCCGACCACGAACAGTTCAGTTGTTGCTGCAGAAACTTCCAAGAAGCCCCCACCAAAGAGAACCTCTACCAAAGACCGTCACACGAAAGTTGACGGTCGGGGTCGTCGTATCCGAATGCCGGCCTTATGTGCTGCTAGGGTATTCCAACTTACTAGAGAATTAGGCCATAAGTCCGATGGTGAAACCATTGAGTGGCTTCTTCAACAAGCGGAACCCGCTGTGATTGCCGCTACCGGAACCGGTACTATCCCGGCTAATTTCACATCGCTTAACATTTCGTTACGTAGCTCTGGTTCCAGTATGTCGGTTCCTTCACAGCTCCGATCTTCCTCTTATTATAACCCGAATTTCTCCCTTCATCAACAACGTCGAACCCTTTTCCCGGGTTTCGGCCTCTCGTCGGAAACCTCCTCCACCGCCGCTCTTCTCAATTTCCAGTCCACCAACATCGGAAACTCTCTGCTTCAAGCCAAACCCGAAATAAGAGACACTCCCTCTTCGTTAGACCTCTCAGATGCGGCGGAGGAAATCAGTATAGGACGGAAGAGAAGACCGTCGACGGAGCAGGAGTTGTCGTCGTCGTCGTCGCAACATCAAATGGGGGGTTATCTGTTGCAATCGAGTACAGGAACGATTCCAGCGAGTCACGGAGGAGCTCAGGTTCCGGCAAATTTTTGGATGCTTACGAATACAAATAACCAAGTGATGGGGGGTGATCCGATATGGACGTTTCCGTCGGTTAATAACAGCGGTTTGTACAGAGGAACGATGTCGAGTGGGTTACATTTCATGAACTTTCCGGCACCGGTGGCGTTGGTGCCAGGTCAGCAATTCGGGTCCAGCACCGGCGGAGGAAGTAATAATAATAATAACAATAATAATAGTTCCAGTACTGAAGGACACTTAAATATACTCGCCGGACTAAATCCATATCGTTCGGTTTCTAATACTGGCGTAATGGAACCACAAGGAAGTGGGTCGCAGTCACATCATGGCGGCGGTGGAGATGATCGGCATGATACAACGAGTCACCAGTCTTAA 1230 49.59 MEGGDELHHHHHHHHQNHHHQQHHQHRPTFPFQLLEKKDEDAASCSTSPYPSLAISADTATTTPTTNSSVVAAETSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSSYYNPNFSLHQQRRTLFPGFGLSSETSSTAALLNFQSTNIGNSLLQAKPEIRDTPSSLDLSDAAEEISIGRKRRPSTEQELSSSSSQHQMGGYLLQSSTGTIPASHGGAQVPANFWMLTNTNNQVMGGDPIWTFPSVNNSGLYRGTMSSGLHFMNFPAPVALVPGQQFGSSTGGGSNNNNNNNNSSSTEGHLNILAGLNPYRSVSNTGVMEPQGSGSQSHHGGGGDDRHDTTSHQS 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25419111 25420541 + MELO3C017168.2.1 Cme02g01890 321779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01890 409 MobiDBLite consensus disorder prediction 45 74 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 395 409 - -
Cme02g01890 409 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 18 408 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 340 409 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 1 28 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 80 94 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 224 263 - -
Cme02g01890 409 ProSiteProfiles TCP domain profile. 86 140 IPR017887 -
Cme02g01890 409 MobiDBLite consensus disorder prediction 10 26 - -
Cme02g01890 409 Pfam TCP family transcription factor 84 255 IPR017887 -
Cme02g01890 409 MobiDBLite consensus disorder prediction 41 94 - -
Cme02g01890 409 MobiDBLite consensus disorder prediction 340 393 - -
Cme02g01890 409 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 408 IPR005333 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01890 Cme12g02008 CCT
Cme02g01890 Cme12g02008 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01890 Cme-Chr2:25419111 Cme10g00701 Cme-Chr10:4410767 2.08E-46 dispersed
Cme10g00425 Cme-Chr10:2683489 Cme02g01890 Cme-Chr2:25419111 4.06E-85 wgd
Cme12g02008 Cme-Chr12:25710988 Cme02g01890 Cme-Chr2:25419111 1.72E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40940 PF03634 TCP 3.40E-39 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01890 - - csv:101221049 645.966