Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01900 ATGGAAGAATCCATCAAGGACCAGCAATCTACTCCATTTCCTGGTAACTCAGCGAGACCCAAGCTTCAGCGCTATGCTTTACGTTCGGGGACTAAATCTAAAGACGAGAAGCTTCCTGCTCCTGCTCCTGAATTGTCGAATCCTCCTTCTTCTGCCTCAAAGAGGGGAAGATCTGTGTCTAGTGTGAGCAAGAGTGTTGGAGTCCTTGACCTATCTGCCAAGGACAAGTCCGCTAAACCACCAAGAAGGCTGTCTATACCAACAAAAAATGTAAGCCCAGCTCGAAAATTAGTTGGCAACATCACACCAATATCAGAGGTCCGGAGAACTGCTAGGAGCCAGGGGAAAAGTGACACACCTGTTTCTGACTTTTCACGGTCAAGCAAGAAAACATTCCACCTTTTGTCTTCTACATCATATTGGCTATCGCAGATCAAGCTCTCTGAAGCTGCTTCTAAGCATTCAGTGTCGCTTGGATTCTTTAAACTTGCATTGGAGGCAGGGTGCAAGCCTCTTCATCGGATGCGTGATGAACTCAAATCCTATATTAATCGTTGCAACCTTGATGAAAGTGAACAAACGGTGAAAGATTTGCTAGAAAACTACAATTCCGCACAAGAAACAGAGCAACTACAGGTCTCTGAATCCATTACCCAGGGACCTGAAGTGGGAACAAGGTCTTCAGATGATGAAGTTCATAGCTCTTCATCCTCAGTAGAGCCTAGGAAGCTTAAACCAAAATCCTTAAACGCCGATGTCGCCAAAACTACCCCAGTCACTGAGGTCAATCAGAGAAATCTCACTACAACACCAAGAAATAGAGGAACTTGGAACAAAAATGCAGCCCCAAATTCAACTTCAGAGACGACGAAAAAATCTTTGAAGAAACCCCATAAGCCAAACAAGCAAGAACCCATTCAAGGAAGGGAAAAAACCAAGAAACAAGCAAAGAAACAGCCCAGCGAGAAGGCTCCAGCTAGCAGGAGTCCTGAAGAAGATTCTGTGCAATCAAACAAAGAAAATTTGGAGGCTCCCCAAATTGAAGTGATTTCAACAGAACAGTTAATACTCATCCTAAGAAAATGTGACATTGAACTTTATTCTAATATCTAA 1113 43.58 MEESIKDQQSTPFPGNSARPKLQRYALRSGTKSKDEKLPAPAPELSNPPSSASKRGRSVSSVSKSVGVLDLSAKDKSAKPPRRLSIPTKNVSPARKLVGNITPISEVRRTARSQGKSDTPVSDFSRSSKKTFHLLSSTSYWLSQIKLSEAASKHSVSLGFFKLALEAGCKPLHRMRDELKSYINRCNLDESEQTVKDLLENYNSAQETEQLQVSESITQGPEVGTRSSDDEVHSSSSSVEPRKLKPKSLNADVAKTTPVTEVNQRNLTTTPRNRGTWNKNAAPNSTSETTKKSLKKPHKPNKQEPIQGREKTKKQAKKQPSEKAPASRSPEEDSVQSNKENLEAPQIEVISTEQLILILRKCDIELYSNI 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25472017 25475372 + MELO3C017158.2.1 Cme02g01900 321789

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01900 370 MobiDBLite consensus disorder prediction 1 88 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 226 249 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 253 290 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 291 338 - -
Cme02g01900 370 Coils Coil 188 208 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 47 67 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 206 225 - -
Cme02g01900 370 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 352 - -
Cme02g01900 370 PANTHER MICROTUBULE-ASSOCIATED FUTSCH-LIKE PROTEIN 1 352 - -
Cme02g01900 370 MobiDBLite consensus disorder prediction 206 346 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01900 - - - csv:101218840 614.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01900 Cme-Chr2:25472017 Cme11g01787 Cme-Chr11:26061952 6.58E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g520 . . Bda06g00551 Bda15g00594 . . . Bma12g01002 . . Cma10g00181 Cma11g00160 Car10g00170 Car11g00140 Sed08g0200 . Cpe04g01512 Bhi02g00341 Tan09g2156 Cmetu02g0796 . Hepe09g0134 . . Cla06g01604 Cam06g1778 Cec06g1829 Cco06g1838 Clacu06g1740 Cmu06g1685 Cre06g2501 Cone2ag0859 Cone16ag0153 . . . . . . Blo13g00020 . . . Bpe07g00790 . . Bma08g00209 . Cmo10g00199 Cmo11g00150 . . . . . Cpe18g00804 . . . . . . . . . . . . . . Lsi06g01482 Csa01g00219 Chy02g02514 Cme02g01900
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003808 5 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 0 3 1 1 44