Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01901 ATGGAGGCTCAACAAGCTTTGGCAACCATTGATGATGATAGAGTTCAATCAACTGGAGAAGGAAATGACGAAGCTTCTCCCAACTCTAAACAACGTATTCATCTTAAGGTCGTCACTTCTATGGGTGACTTGGAAAAGCCCTTCATGGAAACTCTTTCAGTACCATCAGCTTCTAATTCAACTTGGAAGGAAGAGGATGATGAGCAACATCATCAACATCATGAAGAAAGAATGAAAAGGACGAAAGTTGAAATGAGGGAAGTAAAGGAAGAAAACGAGAGGTTAAAGAAATATTTGGATGAGATAATGAAAGATTATGAGACATTGAAAAGGAAATTCCATGAGATTAAGTATAATCATGATCATGATCAAATTAGAGAAGATCATCAAGGCAAAAGATCAACACAAACAAGTGGAAGTACAATAAATAATATTAATAACAATGATGATGATGATCATCATCATCAAGTTGAAGCTGAAGTTGATGACATGGTTTCACTCACATTAGGATCATCAAGATTCTCAACCCATCATCAAAACAAGAACACTTCTTCTTCTTCTTCTTCCTTCTCTCTAACTAATAAGATCTTAGATCTCAAACAAGATTATGTTATTCAAACCCCATCAATTATTGATCACAATATTCATAGTCCAACCCATAGTGAACCTAAAGATCAGGAAGAAGCCGGACAGACGACTTGGCCCCCGAGTAAAATGTCGAAACCTGGCGGTTTGCCCTCACCTGCTATCGGAGAAGATGAAGTTTCTCCACAGAATCCTCCTAAGAAAGCTAGGGTTTGTGTTAGAGCTCGATGTGATACTCCAACGATGAACGATGGATGTCAATGGAGAAAATATGGACAAAAGATAGCAAAAGGAAATCCATGCCCTAGAGCTTATTATCGATGCACCGGTGCACCCACTTGTCCCGTTAGGAAACAGGTACAAAGGAGTGTTGATGATATTTCCATACTAATAACAACCTATGAAGGAACTCACAACCATCCTCTACCTGTTTCAGCCATGGCCATGGCTTCCACCACCTCCGCTGCCGCTTCGATGCTCCTCTCGGGCCCTTCCTCCTCCTCCTCTACCTCCTCCCAACCTGGCCTAAACCATTCATGTACCGCTGCTGCGACCGCCGTGAATCTTCATGGAATGAACATGTATCTCTCTAACAACACCAGTTCAAAGCAATTCTATTTGCCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACTTTAGATCTCACTTCAAATCCTCCTTCAACTTCCTCCTCTTCTCCTTTCCACAAAATTCCTTTAGTTAATAATAATAATAATTATAATAATTATCCCCCAAAATATCCCTTCACAAATCTTGATTTTGCCTCTTCACAACCCAATTTCATGTCTTGGAATAATAATAATAATAATAATGCTTATGGTAATATTACCAAAAATAGTAATGCAATAATAGGAATGGGATCAGATTTTGCTAATAAACAACTTCCTCTTCATACTAACATCTACCAAGCTTATCTTCAACAAATTTCTAAATCTTCAATGACTCCGCCGCAACCGGCTCTACCGTCAGATACGATAGCAGCAGCAACTAAGGCAATTACATCGGACCCGAGTTTCCAATCGGCATTGGCGGCTGCGTTGAGCTCGATTATCGGAGGCGGGGAGACGGGTCCGAGTGTTTCTAGCTTAGTTGTTGGAGGAGGAGGAGGAGGACAAGGAAGTATGGGGTTTGAGGCTGCAGCTAAGTCATTAACATGCTCTACTTCTAAGAGTACTCCTTCTTCATCTCCTGGGGACAGTAGAGATAATGGGAAGTGA 1836 40.63 MEAQQALATIDDDRVQSTGEGNDEASPNSKQRIHLKVVTSMGDLEKPFMETLSVPSASNSTWKEEDDEQHHQHHEERMKRTKVEMREVKEENERLKKYLDEIMKDYETLKRKFHEIKYNHDHDQIREDHQGKRSTQTSGSTINNINNNDDDDHHHQVEAEVDDMVSLTLGSSRFSTHHQNKNTSSSSSSFSLTNKILDLKQDYVIQTPSIIDHNIHSPTHSEPKDQEEAGQTTWPPSKMSKPGGLPSPAIGEDEVSPQNPPKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPTCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGPSSSSSTSSQPGLNHSCTAAATAVNLHGMNMYLSNNTSSKQFYLPNSSMLSSSLNHPTITLDLTSNPPSTSSSSPFHKIPLVNNNNNYNNYPPKYPFTNLDFASSQPNFMSWNNNNNNNAYGNITKNSNAIIGMGSDFANKQLPLHTNIYQAYLQQISKSSMTPPQPALPSDTIAAATKAITSDPSFQSALAAALSSIIGGGETGPSVSSLVVGGGGGGQGSMGFEAAAKSLTCSTSKSTPSSSPGDSRDNGK 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25476555 25480329 - MELO3C017157.2.1 Cme02g01901 321790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01901 611 Coils Coil 71 112 - -
Cme02g01901 611 MobiDBLite consensus disorder prediction 61 80 - -
Cme02g01901 611 SUPERFAMILY WRKY DNA-binding domain 270 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01901 611 MobiDBLite consensus disorder prediction 20 34 - -
Cme02g01901 611 MobiDBLite consensus disorder prediction 53 80 - -
Cme02g01901 611 MobiDBLite consensus disorder prediction 121 153 - -
Cme02g01901 611 SMART WRKY_cls 277 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01901 611 MobiDBLite consensus disorder prediction 588 611 - -
Cme02g01901 611 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 65 571 - -
Cme02g01901 611 Pfam WRKY DNA -binding domain 278 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01901 611 ProSiteProfiles WRKY domain profile. 272 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cme02g01901 611 Gene3D WRKY domain 262 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cme02g01901 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 65 571 IPR044810 GO:0003700
Cme02g01901 611 MobiDBLite consensus disorder prediction 213 264 - -
Cme02g01901 611 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01901 Cme12g01756 CCT
Cme02g01901 Cme12g01756 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01901 Cme-Chr2:25476555 Cme06g01299 Cme-Chr6:10822082 8.13E-44 dispersed
Cme12g01756 Cme-Chr12:24233364 Cme02g01901 Cme-Chr2:25476555 9.78E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
40942 PF03106 WRKY 1.40E-23 CL0274 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01901 - - cmo:103493975 1031.17