Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01906 ATGGGTCTTTTTATTTGGGTCTCCTCCTTCATTTTAGTAGCTACCCTTTTAAGCAAATGCTCTTTTTCTCTCACTGAAGATGGTTTAACATTGTTGGAAATCAAAAGTACTTTAAATGACACTAAGAACGTCCTCAGTAATTGGAGCCCTACAGATGAAACTCCCTGTAAATGGACTGGTATCTCTTGCCATCCTGAGGACTCTCGTGTCAGCTCGGTGGCTCTCCACCAGAACGGCTTACATGGATATATCCCCAATGAACTTGCCAATTGTTCTGAACTTAGAGCTCTGTACTTGAGGGCTAATTATCTTCAAGGAGGCATTCCATCAAATATTGGAAACCTTTCATACCTTACCATACTTGATTTATCTTGCAATTCCTTTAAGGGTAGTATACCATCATCAATTGGTCGTCTTACACACTTGCGGAATCTATTCTTTGGTAATCAAGGTCTTTGTGGTCGACAAGTGAACAAGCCGTGCCGGACTTCACTGGGTTTTCCTGTCGTCTTACCACATGCTGAAATTCCTCCTAAGCGATCCTCTCATTACACCAAAGGACTGTTGATTGGTGCAATATCAACAGCAGGGTTTGTGTTGGTCATACTTATTGTATTCACGTGGACTCGTCTGGTGTCGAAGAAAGAAAGAACTGCAAAGAGTTACATGGAAGTTAAGAAGCAAAAAAGTCGTGATACAAGTGCAAAGCTTATTACATTCCATGGGGATCTACTATATCCAACATGTGAGATCATAGAAAAGCTGGAGGCCCTGAATGAAACAAATGTTGTTGGCTCAGGAGGTCTTGGAACTGTGTATCGAATGGTCATGAATGATTCCGGAGCTTTTGCTGTGAAGAAAATTGATAGGACTCAAGACGGTCCAGACCAAGTAGTTGAAAGAGAATTGGAGATACTGGGTAGCATTAAACACATAAATTTAGTGAAATTGCGTGAACGTGGACCAGAACAGTCATTGGATTGGAGTGCTCGGTTAAACATAGCGTTAGGCTCCGCTCGAGGACTGGCGTACTTACACCACGATTGCTGTCCAAAGATTGTGCACTGCAACATAAAATCCAGCAACATTCTTCTTGACGAGAACTTAGAGCCGCACGTATCTGACTTTGGTCTTGCAAAGCTTTCGGTTGATGGGGATTCCCATGTCACAACTGTTGTTGCTGGCACATTTGGTTATTTGGCTCCAGAATACTTAGAAAGTGGGATAGGAACTGAGAAGTCTGATGTTTATAGCTTTGGAGTTCTCTTGCTGGAGCTTGTAACAGGAAAGAGACCAAGTGATCCATTTTTCTCGAAGAGGGGTGTAAATATTGTTGGTTGGTTGAACACCTTGCGGGGAGAAGACCAATTGGAGAACATAGTCGATAATAGGTGCAAGAATGCAGATGTCGAAACGGTAGAAGCGATTCTCGAAATAGCAGCGAGGTGCACCAATGGCAACCCAACTATGCGGCCTACAATGAACCAAGTACTGCAGCAGCTAGAGCAAGAGGTGATGTCGCCGTATCCGAGTGATTACTCTGAATCTCACTCGGATTATTCATGA 1566 43.1 MGLFIWVSSFILVATLLSKCSFSLTEDGLTLLEIKSTLNDTKNVLSNWSPTDETPCKWTGISCHPEDSRVSSVALHQNGLHGYIPNELANCSELRALYLRANYLQGGIPSNIGNLSYLTILDLSCNSFKGSIPSSIGRLTHLRNLFFGNQGLCGRQVNKPCRTSLGFPVVLPHAEIPPKRSSHYTKGLLIGAISTAGFVLVILIVFTWTRLVSKKERTAKSYMEVKKQKSRDTSAKLITFHGDLLYPTCEIIEKLEALNETNVVGSGGLGTVYRMVMNDSGAFAVKKIDRTQDGPDQVVERELEILGSIKHINLVKLRERGPEQSLDWSARLNIALGSARGLAYLHHDCCPKIVHCNIKSSNILLDENLEPHVSDFGLAKLSVDGDSHVTTVVAGTFGYLAPEYLESGIGTEKSDVYSFGVLLLELVTGKRPSDPFFSKRGVNIVGWLNTLRGEDQLENIVDNRCKNADVETVEAILEIAARCTNGNPTMRPTMNQVLQQLEQEVMSPYPSDYSESHSDYS 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25503751 25508051 - MELO3C017153.2.1 Cme02g01906 321795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01906 521 Gene3D Transferase(Phosphotransferase) domain 1 316 513 - -
Cme02g01906 521 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Cme02g01906 521 Pfam Protein kinase domain 333 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01906 521 SUPERFAMILY Protein kinase-like (PK-like) 237 502 IPR011009 -
Cme02g01906 521 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 146 321 - -
Cme02g01906 521 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 35 75 - -
Cme02g01906 521 Gene3D Phosphorylase Kinase; domain 1 217 315 - -
Cme02g01906 521 SUPERFAMILY L domain-like 25 154 - -
Cme02g01906 521 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 146 321 - -
Cme02g01906 521 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 73 145 - -
Cme02g01906 521 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 145 - -
Cme02g01906 521 ProSiteProfiles Protein kinase domain profile. 258 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme02g01906 521 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 324 513 - -
Cme02g01906 521 Gene3D Ribonuclease Inhibitor 25 165 IPR032675 -
Cme02g01906 521 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 324 513 - -
Cme02g01906 521 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 35 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01906 - - - csv:101217728 983.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme02g01906 Cme12g01746 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01906 Cme-Chr2:25503751 Cme07g00770 Cme-Chr7:7071782 8.43E-154 dispersed
Cme12g01746 Cme-Chr12:24175729 Cme02g01906 Cme-Chr2:25503751 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g494 . . . Bda15g00592 . . . . . Cmo18g00100 Cma10g00179 Cma11g00165 Car10g00167 Car11g00135 . . Cpe04g01517 Bhi02g00353 . . . . . . Cla06g01608 . . . . . . . . Cone13ag0089 Cone19ag0092 Lsi02g00318 Csa01g00795 Chy12g01321 Cme12g01746 Blo13g00023 . . . . . . Bma08g00212 . Cmo10g00196 Cmo11g00145 . Cma18g00130 . Car18g00121 Cpe09g01063 . Bhi08g01420 . . . . . . Cla01g01420 . . . . . . Lsi06g01488 Csa01g00213 Chy02g02519 Cme02g01906
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002646 1 2 0 1 0 0 3 0 0 2 1 1 3 2 0 3 1 0 2 1 2 0 0 0 0 2 0 0 0 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
64708 PF00069 Pkinase 1.90E-26 CL0016 Cme PK