Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01909 ATGGAAGAAAAGGGAGAGAAGCCTGAGGTTTTGGAGGCTGTATTGAAGGAAACTGTGGACTTGGAAAACATACCCATCGAGGAGGTTTTTGATAATCTGAGATGTAGCAAAGAGGGTCTTACGACAGCAGCAGCTGAGGAACGGCTTGTAATTTTTGGTCACAACAAGCTTGAGGAGAAGAAGGAAAGTAAAATATTGAAGTTTTTGGGGTTTATGTGGAACCCCTTATCATGGGTAATGGAGGCTGCTGCTATTATGGCCATTGCACTCGCAAATGGTGGAGGAAAGCCTCCTGACTGGCAGGATTTTGTTGGTATTATCGCCCTGCTGCTTATCAACTCAACAATTAGTTTCATTGAGGAAAATAATGCCGGAAACGCTGCAGCTGCGCTAATGGCCAGTTTAGCTCCCCAAGCCAAGATTCTTCGAGATGGAAGGTGGAGTGTACAAGATGCGTCAGTTTTAGTTCCTGGTGATATTATAAGTATCAAACTTGGGGATATTATTCCAGCTGATGCACGTCTTCTGGAGGGGGATCCATTGAAAATCGATCAGTCTGCACTTACAGGCGAGTCTCTTCCTGTTACTAAAGGTCCCGGCGATGGCATATACTCTGGTTCTACTTGTAAACAAGGAGAGATCGAAGCGGTGGTAATTGCCACTGGTGTTCATACTTTCTTTGGCAAAGCTGCCCACCTTGTTGACACCACTAACCAAGTGGGACACTTCCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATTTGTTCCATTGCTGTGGGCATGATTACAGAAATTATTGTCATGTACCCTATCCAAGATCGTGACTATCGTCCTGGAATTGACAATCTTCTTGTGCTTTTGATTGGAGGAATTCCAATTGCCATGCCCACAGTTCTCTCTGTGACAATGGCTATTGGCTCTCATAGGTTATCTCAGCAGGGTGCTATCACAAAGAGGATGACTGCAATTGAAGAAATGGCAGGAATGGATGTGCTTTGCAGTGACAAGACGGGAACACTGACATTAAACAAGCTAACTGTCGACAAAAATCTTGTTGAGGTTTTTGCTAAAGGAGTGGATGTCGATACTGTGGTTCTCATGGCAGCCCGGGCATCAAGAACAGAGAATCAAGATGCTATTGATACTGCCATTGTTGGGATGCTTGCTGACCCAAAAGAGGCTCGTGCTGGTATTCAAGAAGTACACTTCCTTCCATTTAACCCTACTGATAAGCGGACTGCATTGACTTATATAGACGGTGAAGGTAAAATGCATAGAGTCAGCAAAGGGGCACCCGAGCAGATTCTGAACCTTGCACACAATAAGTCAGAGATTGAGCGCAAAGTTCATGCTGTGATAGACAAGTTTGCAGAGCGAGGTTTACGCTCCCTTGCTGTGGCATACCAGGAAGTTCCAGATGGTCGAAAGGAGAGTGCTGGAGGTCCATGGCAGTTTGTTGGCCTCCTGCCACTGTTTGACCCACCAAGGCATGACAGTGCAGAGACAATAAGGAGGGCATTAAATCTTGGAGTGAATGTGAAGATGATTACTGGTGACCAGCTGGCCATTGGAAAGGAAACAGGACGTCGCTTGGGGATGGGAACCAACATGTATCCCTCATCTGCTTTGCTAGGACAGGACAAGGATGAGTCTATTGCTGCTTTACCTGTTGATGAACTGATAGAAAAAGCTGATGGCTTTGCTGGCGTTTTTCCTGAGCACAAATATGAGATTGTAAAGCGCCTGCAGGCAAGGAAACATATCTGTGGAATGACTGGGGATGGAGTAAATGATGCTCCTGCCCTCAAAAAAGCTGACATAGGGATAGCTGTCGCTGATGCTACAGATGCTGCTCGCAGTGCTTCAGACATAGTCCTTACAGAGCCTGGTTTGAGTGTTATCATTAGTGCTGTTTTGACCAGCCGTGCTATCTTTCAGAGGATGAAAAATTACACTATATATGCAGTTTCGATCACTATTCGTATAGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAATTTGACTTCCCACCATTTATGGTGCTTATCATTGCCATTCTCAATGATGGTACAATAATGACGATTTCAAAGGATAGAGTAAAACCGTCTCCTTTGCCTGATAGCTGGAAACTGGCTGAAATTTTCACAACTGGCATTATACTTGGCGGTTACTTGGCAATGATGACTGTTATCTTCTTTTGGGCGGCCTATAAGACAAACTTTTTTCCACGAGTCTTTGGGGTAGCAACTCTCGAGAAAACTGCTCACGATGACATAAGGAAACTGGCCTCAGCAGTGTATCTTCAAGTAAGCACTATAAGTCAGGCTCTCATATTTGTTACTCGCTCTCGAAGTTGGTCTTATGTGGAACGTCCTGGGTTATTACTGGTTGCAGCTTTTCTGGTTGCACAGCTGATTGCTACTTTAATTGCGGTTTATGCAAACTGGGGCTTTGCTGCCATTGAAGGAATTGGATGGGGTTGGGCTGGTGTTATCTGGCTTTACAACATTATCTTTTACATCCCACTTGATCTCATTAAGTTCTTTATACGATATGCTTTGAGTGGGAGGGCTTGGGATCTTGTTATTGAACAGAGGATTGCCTTCACGAGACAAAAGGATTTTGGGAAGGAACAACGGGAGCTACAATGGGCTCATGCGCAAAGAACATTACACGGATTGCAAGCACCTGACGCCAAAATGTTCCACGACCGAACTCATTTCACCGAGCTCAATCAGATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCAAGGTTGAGGGAACTACACACCTTGAAAGGCCATGTTGAATCAGTGGTGAGGCTGAAAGGACTTGACATTGACACAATTCAGCAAGCTTACACAGTGTGA 2880 44.9 MEEKGEKPEVLEAVLKETVDLENIPIEEVFDNLRCSKEGLTTAAAEERLVIFGHNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIIALLLINSTISFIEENNAGNAAAALMASLAPQAKILRDGRWSVQDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDGIYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMITEIIVMYPIQDRDYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLVEVFAKGVDVDTVVLMAARASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDGEGKMHRVSKGAPEQILNLAHNKSEIERKVHAVIDKFAERGLRSLAVAYQEVPDGRKESAGGPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTNFFPRVFGVATLEKTAHDDIRKLASAVYLQVSTISQALIFVTRSRSWSYVERPGLLLVAAFLVAQLIATLIAVYANWGFAAIEGIGWGWAGVIWLYNIIFYIPLDLIKFFIRYALSGRAWDLVIEQRIAFTRQKDFGKEQRELQWAHAQRTLHGLQAPDAKMFHDRTHFTELNQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25521866 25529701 - MELO3C017150.2.1 Cme02g01909 321798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01909 959 Gene3D - 137 221 - -
Cme02g01909 959 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 39 815 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme02g01909 959 Coils Coil 910 930 - -
Cme02g01909 959 Gene3D - 331 630 IPR023214 -
Cme02g01909 959 Pfam haloacid dehalogenase-like hydrolase 330 607 - -
Cme02g01909 959 PRINTS H+-transporting ATPase (proton pump) signature 450 468 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 Gene3D - 908 959 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 184 198 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 334 348 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 488 499 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 510 520 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Cme02g01909 959 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Cme02g01909 959 SMART Cation_ATPase_N_a_2 20 92 IPR004014 -
Cme02g01909 959 PANTHER CALCIUM-TRANSPORTING ATPASE 6 939 - -
Cme02g01909 959 Pfam Cation transporter/ATPase, N-terminus 23 86 IPR004014 -
Cme02g01909 959 SUPERFAMILY Calcium ATPase, transmembrane domain M 20 856 IPR023298 -
Cme02g01909 959 SFLD C1.7: P-type atpase like 316 644 - -
Cme02g01909 959 SUPERFAMILY Calcium ATPase, transduction domain A 137 234 IPR008250 -
Cme02g01909 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 106 352 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 568 681 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cme02g01909 959 PANTHER PLASMA MEMBRANE ATPASE 1 6 939 - -
Cme02g01909 959 SUPERFAMILY HAD-like 330 640 IPR036412 -
Cme02g01909 959 Pfam E1-E2 ATPase 135 313 - -
Cme02g01909 959 ProSitePatterns E1-E2 ATPases phosphorylation site. 336 342 IPR018303 -
Cme02g01909 959 Gene3D - 99 824 - -
Cme02g01909 959 CDD P-type_ATPase_H 39 850 IPR006534 GO:0008553|GO:0016021|GO:0120029
Cme02g01909 959 Gene3D - 346 493 IPR023299 GO:0000166
Cme02g01909 959 SFLD p-type atpase 316 644 IPR044492 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme02g01909 Cme12g01744 CCT
Cme02g01909 Cme12g01744 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01909 Cme-Chr2:25521866 Cme03g01691 Cme-Chr3:25617688 0 dispersed
Cme11g00342 Cme-Chr11:3550683 Cme02g01909 Cme-Chr2:25521866 2.41E-19 transposed
Cme12g01744 Cme-Chr12:24163351 Cme02g01909 Cme-Chr2:25521866 0 wgd
Cme02g01909 Cme-Chr2:25521866 Cme09g00295 Cme-Chr9:2330877 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01909 K01535 - csv:101217264 1806.96