Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01910 ATGAAGGTTCAGCCGCCTCCCTTTTCACTTCGTTTCTTCAGCTCTAGTCTTCAGTTACTCATTACAAGTTTCAGGTTAATTGGGGTTTCATGTATTATGTTGCGAGCAAAGCAGATTGGCAGTCTTTCAAACAGTGCCAGATCATTTTTTCTTAGTGGATCACGATGTAATGCAGACGGGGCTTCGTGCACATGCCCTGAAGATGAAACTTGTGTTTCCCAGAGACAAAATGCTAGGAATGAAACCCTGCCCTCACAAAAGCCATCTACCTTGGTAGCCAATAGTTCACCTAGAGTAGGACCTTTAATTGCCGAAGAAGCAGCAAAAGTAATTGTATCTCACAAAACTGACAATGTTGATCTCTCAGTTTCTATTCGACAAGTTACGAACACTGGCCCCAATCACCAGAGGGGAGCAGAATGTGTAAGATACTCCAGTGGCCTTAACACTGTTCTGGATGGTGAGTGCTCTTCACCAAGGATAGCAGATCAGGTTGTTAAGGCAGGTATTATGGCTGTAAACTTATTCTCTGACTTCGTGAATTTTAAAATCCCCTTATCTGACTATGGTGGAACATTTAGCTCATCCAAGAATTGTATGGTTGATCCTGCCCGGTCCATTACTTCTGTCAAACCTTCAAAAATCAAGCATCTGAGAAGAGAGAATATTTCTAGAGTTCATTCCAGACCATCTGTTGAAACCCACGTAGATTCTAAGCCCCAAAGTAGTAGTAACCATGGTTCAAATTGCAAGCCCGCGCAATCCAGTTATGTCAAAGGCTCAAGGCAAGAAGTTTCCAAGGCCAGAACACAAAAGTCGGTGGTATTTCAAGATATCTCCTCAGACAAGTGTGATAAAAGGAATTTACCACAGAGAACAAGGGTTCATTCAAACAGTTTTACTTCACATTTTCATTCCATTGCACAGACCACAGGGTCAGACCTCACAAGTTCTTCTAAGAATTTGAAAAAGTTTCCAGATAATTTAAAAAGCCCCACAGGAATGGCACCAATCAATTCATCGTTTTTGAATTCGCCTAATGTTGTGGAAAGTGTTTCTTGCATATTGCAACAACTTAAATGGGGCCCTGCTGCAGAAGAAGCTATTGGGAAATTGAACTGTTCGATAGATGCATACCAGGCAAACCAAATTCTGAAGCGGGTAGATGACCATGCTGTTGCTCTTGGGTTCTTTTATTGGTTAAAGCGTCTAGCTAGGTTTAGACATGATGGGCACACTTATACTACTATGATTGGCCTCCTTGGTCGTGCCAAACAGTTTGCTGCTATAAATAAATTGCTTGATCAGATGATCAAGGATGGGTGCCAGCCCAATGTTGTAACATATAATCGTATAATTCATAGTTATGGTCGTGCAAACTATTTGCAAGAAGCTGTTAATGTATTCAAACAAATGCAGGAAGCAGGATGTGAGCCTGATAGAGTCACCTACTGCACACTCATTGACATTCATGCAAAATCTGGCTTTCTCGATGTTGCCATGGGAATGTATGAGAAGATGCAAGATGCTGGCCTCACTCCTGACACATTTACTTACAGTGTTATGATCAACTGCTTGGGGAAAGCTGGCCATTTAAATGCTGCACATAGGCTATTCTGCAGGATGGTTGATCAAGGCTGTGTTCCAAATTTGGTAACCTACAATATCATGATTGCTCTTCAAGCAAAAGCAAGGAATTACGAGATTGCATTGAAGCTGTACCGTGATATGCAACAATCAGGTTTTGAGCCAGATAAAGTGACTTACTGCATAGTTATGGAAGTATTAGGTCATTGTGGTTTCCTTGAGGAGGCTGAAGGTATATTTATTGAGATGCAAAAGAAGAACTGGGTGCCCGATGAACCTGTTTATGGTCTATTAGTGGACTTATGGGGAAAATCTGGTAATGTTCAAAAGGCATGGGAATGGTATCATGCTATGCTTAAGGCGGGTTTAAAGCCAAATGTTCCTACTTGCAATTCCTTGCTTAGTGCCTTTCTTAGGGTACACCAACTATCGGATGCCTATCAGCTGTTGCAATCTATGCTGACTTTTGGTTTAAAACCTTCTCTACAAACTTATACCTTGCTTCTCAGTTGTTGCACTGATGCGCAAACGAATGACATGGGGTTTTGTTGTGAACTCATGCAAGTCACCGGTCACCCAGCACACACATTCCTGGTGTCGTTGCCATCGGCTGGACCTAATGGTCAAAATGTGCGGGATCACATGAGCAAATTTTTGGACCTCATGCACAGTGAAGACAGAGAGAGCAAGAGGGGGCTCGTGGATGCAGTTGTAGATTTTCTTCATAAATCAGGACTTAAGGAGGAGGCAGGCTGTGTCTGGGAGGCTGCCATGCAAAAGAATGTCTATCCAGATGCTGTAAAGGAGAAAAGCTCCTGTTATTGGCTCATTAACTTGCACGTCATGTCTGATGGCACCGCCGTAACAGCTTTGTCTAGGACTCTTGCTTGGTTTCGCCAGCAACTACTTCTTTCAGGTGTCGGTCCCAGCCGAATTGATATTGTGACTGGATGGGGTCGGCGAAGTAAGGTCACTGGATCTTCCCTAGTGAGACAGGCAGTTCAGGACCTGCTGAGCATTTTTAGCTTCCCTTTCTTCACTGAAAATGGTAATTCTGGATGTTTTGTCGGGTGTGGGGAACCTCTAAGTAGATGGTTGCACCAATCTTATGTGGAGAGGATGCATTTGTTGTAG 2721 43.04 MKVQPPPFSLRFFSSSLQLLITSFRLIGVSCIMLRAKQIGSLSNSARSFFLSGSRCNADGASCTCPEDETCVSQRQNARNETLPSQKPSTLVANSSPRVGPLIAEEAAKVIVSHKTDNVDLSVSIRQVTNTGPNHQRGAECVRYSSGLNTVLDGECSSPRIADQVVKAGIMAVNLFSDFVNFKIPLSDYGGTFSSSKNCMVDPARSITSVKPSKIKHLRRENISRVHSRPSVETHVDSKPQSSSNHGSNCKPAQSSYVKGSRQEVSKARTQKSVVFQDISSDKCDKRNLPQRTRVHSNSFTSHFHSIAQTTGSDLTSSSKNLKKFPDNLKSPTGMAPINSSFLNSPNVVESVSCILQQLKWGPAAEEAIGKLNCSIDAYQANQILKRVDDHAVALGFFYWLKRLARFRHDGHTYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQEAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDQGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSMLTFGLKPSLQTYTLLLSCCTDAQTNDMGFCCELMQVTGHPAHTFLVSLPSAGPNGQNVRDHMSKFLDLMHSEDRESKRGLVDAVVDFLHKSGLKEEAGCVWEAAMQKNVYPDAVKEKSSCYWLINLHVMSDGTAVTALSRTLAWFRQQLLLSGVGPSRIDIVTGWGRRSKVTGSSLVRQAVQDLLSIFSFPFFTENGNSGCFVGCGEPLSRWLHQSYVERMHLL 906
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25539210 25542946 + MELO3C017149.2.1 Cme02g01910 321799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Cme02g01910 906 PANTHER BNAA07G31720D PROTEIN 33 906 - -
Cme02g01910 906 MobiDBLite consensus disorder prediction 219 234 - -
Cme02g01910 906 Gene3D Tetratricopeptide repeat domain 508 647 IPR011990 GO:0005515
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
Cme02g01910 906 Gene3D Tetratricopeptide repeat domain 360 507 IPR011990 GO:0005515
Cme02g01910 906 Gene3D Tetratricopeptide repeat domain 648 717 IPR011990 GO:0005515
Cme02g01910 906 SMART SMR_2 803 889 IPR002625 -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 552 585 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 412 446 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 623 656 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 482 516 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 517 550 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 447 480 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 587 621 IPR002885 -
Cme02g01910 906 TIGRFAM PPR: pentatricopeptide repeat domain 658 690 IPR002885 -
Cme02g01910 906 MobiDBLite consensus disorder prediction 219 270 - -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Cme02g01910 906 PANTHER OS03G0856100 PROTEIN 33 906 - -
Cme02g01910 906 Pfam PPR repeat 413 442 IPR002885 -
Cme02g01910 906 Pfam PPR repeat 623 652 IPR002885 -
Cme02g01910 906 SUPERFAMILY SMR domain-like 804 884 IPR036063 -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Cme02g01910 906 Pfam PPR repeat 511 543 IPR002885 -
Cme02g01910 906 ProSiteProfiles Smr domain profile. 806 887 IPR002625 -
Cme02g01910 906 Gene3D - 783 885 IPR036063 -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Cme02g01910 906 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Cme02g01910 906 Pfam PPR repeat family 444 490 IPR002885 -
Cme02g01910 906 Pfam PPR repeat family 654 701 IPR002885 -
Cme02g01910 906 Pfam PPR repeat family 549 595 IPR002885 -
Cme02g01910 906 SUPERFAMILY HCP-like 444 653 - -
Cme02g01910 906 MobiDBLite consensus disorder prediction 235 270 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01910 - - - csv:101217022 1743.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01910 Cme-Chr2:25539210 Cme01g02186 Cme-Chr1:30709897 2.23E-08 dispersed
Cme03g00044 Cme-Chr3:740305 Cme02g01910 Cme-Chr2:25539210 3.87E-16 dispersed
Cme07g01903 Cme-Chr7:24291796 Cme02g01910 Cme-Chr2:25539210 1.84E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g487 . . Bda06g00556 . Bpe12g00560 . . . . . . . . . Sed12g1925 . . Bhi02g00357 Tan09g2169 Cmetu02g0830 . Hepe09g0143 . . Cla06g01612 Cam06g1790 Cec06g1840 Cco06g1847 Clacu06g1750 Cmu06g1694 Cre06g2511 Cone2ag0866 Cone16ag0141 Cone13ag0093 Cone19ag0096 . . . . Blo13g00026 Blo15g00297 . . Bpe07g00797 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g01494 Csa01g00208 Chy02g02524 Cme02g01910
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009833 1 1 2 0 2 3 0 1 1 1 1 1 0 1 1 0 1 4 0 1 1 1 1 1 1 1 1 1 2 1 33