Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme02g01911 ATGGCGCGCAAGAAGAAGAACACTGATCCGCGTCAAGGAGTCGCCGGTGAGGGTCCAAGTGAAGCGACCGCTGCCGGAAAGAGTTCAGTATCTGATAAGCCGAGTAGTCAAAATCAAAGTAGGATCGACAGGGTGGTTGTCAAGGAATCGGATGAAGGTCTGTCGTATTCCGCAATTAAACTCGAATGTGAGAAGGCTCTTACCGCACTTCGGCGCGGAAACCACACCAAGGCACTCAGGCTTATGAAGGACTTGAGTTCAAGAAATGAGAACTCTGTTAACTCGGCACTGATTCATCGCGTTCAGGGTACTCTTCTTGTAAAAGTTGCGTCGATTATTGATGACCCGAGTACAAAGCAGCGGCATTTGAAAAATGCGATTGAGTCGGCTCGGAAAGCTGTCCAACTCTCACCAGACTCAATTGAATTTTCACATTTCTACGCAAATTTGCTTTATGAGGCCGCAAATGATGCAAAGGAGTACGAAGAGGTCGTGCGAGAGTGTGAGCGGGCCTTGGTAATTGAAAATCCTATCGATCCTGCCAAAGAAAGTTTGCAAGACGAACAGAATCAGAAAATACCTACTGCCGAAGCCCGAATCACACACGTTCAGACGGAATTGAGGCAGTTAATTCAAAAATCGAGTATATACTCTATATCATCTTGGATGAAGAATTTAGGTAACGGGGAAGAGAAGTTCAGATTGATTCCCCTTAGAAGAGTGACAGAGGACCCAATGGAGGTGGGGATGGTTCAGGCTAGAAGGGCAAACGAAATCAAGAAAGCAACCAAAACGCCTGAAGAGCGAAGGAAGCAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTGATGCAACAACAGTCTGAGTCGCCTCCAATGCAGGATGAAGGAGGGTCTGTTCGGAACCAGGAGACATCTCCAGGGTCTGTTACAAGGGTTGTTGAGCGGCGGAAACATGGTAGTGTGCGGAAACTTGGCTCTTCAGCTGAAAGAAAGAATTGGGTTTATTCTTTGTGGAATTCTATGAGTTCAGAATCAAAGAAAGATGTGCTTAAGATCAAGATTAGTGATCTTGAGACTCACTTTAGTTCTTTGAAGGATACCTCGGCAAATGAATTTATTTCAGAAGCCTTGTCTTTTTATGACGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAAATGTGATAAGAAATTTGTGAATCCAGAATCCCATATGCACCACGTGGCTCAAGAGCACTTGGGCAACCTTTTGCCGAAAATGCAATCTATGTTGCCACACAATGTCGATAATGATTGGAGTGAAATGCTTCTCAATTGCTCTTGGAAACCGTTGGATGTTTCAGCTACAACCAAAATGTTCACAGATCAAACTAAATGCAAAGATTCTGAGTTCGTTGAAGATATGTGCCCACAACGTTTTTCAGAATGTGACGAGTGTCTCAAAGACGCATGGGATTCTTCTCCAGAGAAGCAGGATCATGAGAATATTTTAAATGAATCCAAACTTTATGAAAAAATTAGCAACAGCGGATATCAAATACCTGATAGTTTTCCAGTATCTGATGACCCTGAGCGTGCAAAGCTTCTTGAAAAAATTCGTGCGGTATTTGAGTTACTTATTAAACATAAATATCTTGCTGCAAGCCAGCTAAACAAGATTATACAATTTACCATGGATGAGCTACAGGGTATTGTTTCTGGACCTCATCTTCTAAAGCAGGGTCTAGATCAAACACCACAATGTATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTTAAGTTTTTGCAAGAATTATCTCAGTCTAGTGGTGTAGGTAGATACTCTGATAGAAGTACCGATCAAAATGAAGATTCAAAGAGTGACAAACAATCTGTTGAGGTCGAAGAGAAAATTGTCTTTAATGGAGATGCATCACTTCTACTCCTTAATGAGGGTTTGTTATCATCTAAAACCCCTCATGTCAGTGATCAGATGCCTGCTGCAAGTGAGGTTAATTCTGACGATCCTTTCCTATCATGGATATATGCAAGTCCCTCTAGTGGGGAACAATTAGCATCATGGGCAAAAACAAAGGAGGAAAAGAAACAAGGGCAAACGGAAAATTTTCAATCGCTTGAGAAGGAATTTTACCAACTGCAGAACCTTTGTGAGAGAAAATGTGAGCATTTGAACTATGAGGAAGCACTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGAGAAGCTATAACTGAATTTATCCCCAAAAGTTATGAGTCAGTCCTGAGGAAGCGAAGAGAGGAGCTTATCGAGGCTGAAAACGATGCGATGTATATAGGCAGTAGGTTTGAGTTGGATGCTTTAACTAATGTTTTGAAAGAAGCTGAAGCTCTGAATGTTAATCAACTTGGATATGGGGAAAATTTTGCCAGCATTCCTTCTCAGTTATATGATTTGGAATCTGGTGAAGATGAAGGTTGGAGGGCTAAGGATTATTTGCATCAAGTTGATACTTGTATTGAAGTTGCAATAAAGAGACAGAAGGAACAACTATCTATTGAGATTAGCAAAATTGATGGACGCATCATGCGAAATGTTACTGGAATGCAAGAGTTGGAACTTAAGCTGGACCCTGTTTCGGCACACGATTATCAATCAATATTGTTGCCTCTTGTGAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGTCACGAAGAAGTCTGATGCTGCAAGAGAAGCATTTTTAGCTGAACTGGAACGAGATTCAAAGAAGGATAGCAAAGGTGGAAGTGATAATCTGAAACATGCACGTGAAAAGTCAAAGGAAAAGAAAAAGAGCAAGGAGTTTAGGAAAGCCAAGGACTCTAAGTTGGTCAGCGTTCGTGAGCAAAATGTGCCTCATGATGAGGTTGTCGATAGAGATACCTTTCAAGTTCCATCTGATGGTGATGCCGCAGAGGTGGATATTGCTGTTAGTGAGAACTCTGATGCTTTAAGACTAGAAGAGGAAGAGATAAGACGCAAAATTGAGCTAGAAGCAGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAAGGAGGCTAAACAAAAGCATTTGGCTGAACTACAAAAGAAATCTGCACAGACAAATCTAAAGAAGAAAGTTGCTCTGGCAGTACCTGAGAATCCCATTGGATTCACCCCCAGTGTTGAGGGTGTTGATGAGCATTTTAAGCTTTCTGTGGTGGATCAATTGGCAGAAAATGATTTGGTTCCCGACTCTTCTAGTACGGCAAGTGCTTCTTCAGGTGCATCCAATGTGGAAAATTCAGATACTAGCCTGCGATCGTCTGATAGGAGGAAGGGTAGGAGAGGTAGACGACATAAGGGTGTAACCAAACCAGTTGATGGAAATCAATCTTCACATTCTGATAAGGATAATGTAGCCTTTGATAGCCAACTGAATGAGCAAGTTAGATATCATGACAATCTCCCAGTAGATAGTGTTAATCCCCATTCTGAAGATAATAGTACGAAGACTTTGAGACAACAACAAGCAGAGGATGATGAGAAACAATTTCAAGCTGACCTTAAGAAGGCTGTACGCGAGAGCCTTGATGCATTTCAAGAAAAGCAGAACTTTCCAAGTTCCAGTACACCATCAACCAGTCGTGGTGAAGTAGATAGTACCGATCTTCCATCAAATGAACTCAATGCAGGCAATGTGCAGGGAGCAGATATTTGTGGTACAGGACTTAAGAATGAAATTGGTGAATACAATTGCTTTCTGAATGTGATTATTCAGTCCTTATGGCATTTACGAAGGTTTCGAGAAGAGTTCCTGAGAAGATCTAAGATCAAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGATATCTTCACTGCCTTGAGCATGGCATCTGCAGATGCTAGAAAAGAAGCAGTTGCCCCCACTTCTTTGAGAATAGCTCTGAGTACTCTTTGTCCTGATAATAAATTTTTCCAAGAGGGCCAAATGAACGACGCCTCTGAAGTGCTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTCCTAGTTTGAGCATTTCTGATACAGAATCAGTAGAAAGCAATTGCATGGGGTCGTGGGACTGTGCAAGTGACACTTGTTTGGTACATTCCATTTTTGGCATGGACATTTTTGAACGAATGAATTGCTATAGCTGTGGCCTGGAATCTAGACATCTAAAGTACACTTCCTTCTTTCACAATATAAATGCGAGTGCCCTTCGAACAATGAAGGTCATGTGTACAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGCTTGTGATTTGGATGTTGGTGGTTGCGGAAAGCTCAATTACATTCATCACTTTCTTACTGCACCACCACATGTGTTCACAACAGTCTTGGGCTGGCAGAACACTTGTGAGAGTGCTGATGACATAACAGCGACATTAGCTGCTCTGGATACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAGTACACATAACTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCCTACAGTCACGACAAGAAATGCTGGATAAAGTATGATGATAGAACTGTTAAGGTAATTGGTGACTGGCTTGATGTTCTTACCATGTGCGAAAAAGGACATTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4755 41.75 MARKKKNTDPRQGVAGEGPSEATAAGKSSVSDKPSSQNQSRIDRVVVKESDEGLSYSAIKLECEKALTALRRGNHTKALRLMKDLSSRNENSVNSALIHRVQGTLLVKVASIIDDPSTKQRHLKNAIESARKAVQLSPDSIEFSHFYANLLYEAANDAKEYEEVVRECERALVIENPIDPAKESLQDEQNQKIPTAEARITHVQTELRQLIQKSSIYSISSWMKNLGNGEEKFRLIPLRRVTEDPMEVGMVQARRANEIKKATKTPEERRKQIEVRVAAARLMQQQSESPPMQDEGGSVRNQETSPGSVTRVVERRKHGSVRKLGSSAERKNWVYSLWNSMSSESKKDVLKIKISDLETHFSSLKDTSANEFISEALSFYDANKTWKFWVCCKCDKKFVNPESHMHHVAQEHLGNLLPKMQSMLPHNVDNDWSEMLLNCSWKPLDVSATTKMFTDQTKCKDSEFVEDMCPQRFSECDECLKDAWDSSPEKQDHENILNESKLYEKISNSGYQIPDSFPVSDDPERAKLLEKIRAVFELLIKHKYLAASQLNKIIQFTMDELQGIVSGPHLLKQGLDQTPQCICFLGASQLRKILKFLQELSQSSGVGRYSDRSTDQNEDSKSDKQSVEVEEKIVFNGDASLLLLNEGLLSSKTPHVSDQMPAASEVNSDDPFLSWIYASPSSGEQLASWAKTKEEKKQGQTENFQSLEKEFYQLQNLCERKCEHLNYEEALQSVEDLCLEEGKKREAITEFIPKSYESVLRKRREELIEAENDAMYIGSRFELDALTNVLKEAEALNVNQLGYGENFASIPSQLYDLESGEDEGWRAKDYLHQVDTCIEVAIKRQKEQLSIEISKIDGRIMRNVTGMQELELKLDPVSAHDYQSILLPLVNSYLRAHLEDLAEKDVTKKSDAAREAFLAELERDSKKDSKGGSDNLKHAREKSKEKKKSKEFRKAKDSKLVSVREQNVPHDEVVDRDTFQVPSDGDAAEVDIAVSENSDALRLEEEEIRRKIELEADERKLEETLEYQRRIEKEAKQKHLAELQKKSAQTNLKKKVALAVPENPIGFTPSVEGVDEHFKLSVVDQLAENDLVPDSSSTASASSGASNVENSDTSLRSSDRRKGRRGRRHKGVTKPVDGNQSSHSDKDNVAFDSQLNEQVRYHDNLPVDSVNPHSEDNSTKTLRQQQAEDDEKQFQADLKKAVRESLDAFQEKQNFPSSSTPSTSRGEVDSTDLPSNELNAGNVQGADICGTGLKNEIGEYNCFLNVIIQSLWHLRRFREEFLRRSKIKHVHVGDPCVVCALYDIFTALSMASADARKEAVAPTSLRIALSTLCPDNKFFQEGQMNDASEVLAVIFDCLHQSLTPSLSISDTESVESNCMGSWDCASDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTMKVMCTESSFDELLNVVEMNHQLACDLDVGGCGKLNYIHHFLTAPPHVFTTVLGWQNTCESADDITATLAALDTEIDISVLYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDKKCWIKYDDRTVKVIGDWLDVLTMCEKGHLQPQVLFFEAVN 1584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 25544120 25552760 + MELO3C017148.2.1 Cme02g01911 321800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme02g01911 1584 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1251 1583 IPR028889 -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 284 309 - -
Cme02g01911 1584 Pfam Ubiquitin carboxyl-terminal hydrolase 1252 1561 IPR001394 GO:0004843|GO:0016579
Cme02g01911 1584 MobiDBLite consensus disorder prediction 284 324 - -
Cme02g01911 1584 PANTHER UBIQUITIN SPECIFIC PROTEINASE 45 1584 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1165 1196 - -
Cme02g01911 1584 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 45 1584 - -
Cme02g01911 1584 Coils Coil 151 171 - -
Cme02g01911 1584 SUPERFAMILY Cysteine proteinases 1251 1581 IPR038765 -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 24 43 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1182 1196 - -
Cme02g01911 1584 ProSitePatterns Zinc finger C2H2 type domain signature. 391 412 IPR013087 -
Cme02g01911 1584 Coils Coil 1184 1204 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 922 964 - -
Cme02g01911 1584 Coils Coil 690 710 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 310 324 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1209 1239 - -
Cme02g01911 1584 CDD Peptidase_C19 1343 1581 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1092 1147 - -
Cme02g01911 1584 Gene3D Tetratricopeptide repeat domain 50 184 IPR011990 GO:0005515
Cme02g01911 1584 MobiDBLite consensus disorder prediction 612 628 - -
Cme02g01911 1584 Gene3D Cysteine proteinases 1242 1582 - -
Cme02g01911 1584 Pfam Protein of unknown function (DUF627) 66 175 IPR006866 -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1210 1239 - -
Cme02g01911 1584 Pfam Protein of unknown function (DUF629) 335 840 IPR006865 -
Cme02g01911 1584 Coils Coil 1004 1024 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 605 628 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1 44 - -
Cme02g01911 1584 MobiDBLite consensus disorder prediction 1092 1113 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme02g01911 - - csv:101212702 2912.09